Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RKE53_RS00870 Genome accession   NZ_CP134413
Coordinates   183447..183812 (-) Length   121 a.a.
NCBI ID   WP_104396690.1    Uniprot ID   -
Organism   Microcystis aeruginosa NRERC-214     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178447..188812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE53_RS00855 (RKE53_00855) - 178785..179996 (-) 1212 WP_311131212.1 glycosyltransferase -
  RKE53_RS00860 (RKE53_00860) pilJ 180073..182727 (-) 2655 WP_104396692.1 methyl-accepting chemotaxis protein Machinery gene
  RKE53_RS00865 (RKE53_00865) - 182821..183351 (-) 531 WP_104396691.1 chemotaxis protein CheW -
  RKE53_RS00870 (RKE53_00870) pilH 183447..183812 (-) 366 WP_104396690.1 response regulator transcription factor Machinery gene
  RKE53_RS00875 (RKE53_00875) - 184199..184291 (-) 93 WP_228009813.1 DUF4388 domain-containing protein -
  RKE53_RS00880 (RKE53_00880) hmpF 184941..186581 (+) 1641 WP_311131213.1 pilus motility taxis protein HmpF -
  RKE53_RS00885 (RKE53_00885) - 187185..187409 (+) 225 WP_104396687.1 hypothetical protein -
  RKE53_RS00890 (RKE53_00890) - 187677..188486 (+) 810 WP_311131214.1 phytoene/squalene synthase family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13935.58 Da        Isoelectric Point: 9.5102

>NTDB_id=879983 RKE53_RS00870 WP_104396690.1 183447..183812(-) (pilH) [Microcystis aeruginosa NRERC-214]
MREILLVEDSQTQRELICDLLRNSGIKVTIAKDGLEALKYIQRGNPDLVVLDIVMPRINGYEVCRRLKSDPKTKNIPVII
CSLKGEVFDRYWGMKIGADAYIVKPFKPIEFICTVKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=879983 RKE53_RS00870 WP_104396690.1 183447..183812(-) (pilH) [Microcystis aeruginosa NRERC-214]
ATGAGGGAAATATTGCTGGTAGAAGACAGCCAAACGCAACGGGAACTGATCTGTGATCTACTCCGCAATAGCGGCATTAA
GGTCACGATCGCCAAAGATGGGTTGGAAGCCCTCAAATATATTCAGAGAGGCAATCCCGATCTCGTTGTCCTCGATATCG
TCATGCCCCGCATCAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCCAAAACCAAAAATATCCCCGTGATCATT
TGTTCCTTGAAGGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAACCCTTTAA
ACCGATTGAGTTCATTTGCACTGTTAAACAACTGCTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

68.333

99.174

0.678
  vicR Streptococcus mutans UA159

38.017

100

0.38
  pilG Acinetobacter baumannii strain A118

39.13

95.041

0.372
  letA Legionella pneumophila str. Paris

34.921

100

0.364
  letA Legionella pneumophila strain ERS1305867

34.921

100

0.364
  micA Streptococcus pneumoniae Cp1015

36.364

100

0.364