Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   RJ558_RS02420 Genome accession   NZ_CP134397
Coordinates   505626..506030 (+) Length   134 a.a.
NCBI ID   WP_180662754.1    Uniprot ID   -
Organism   Helicobacter pylori strain ICDC15003s     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500626..511030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ558_RS02385 (RJ558_02385) - 500795..501733 (-) 939 WP_310957896.1 tetraacyldisaccharide 4'-kinase -
  RJ558_RS02390 (RJ558_02390) - 501730..502512 (-) 783 WP_310957897.1 NAD+ synthase -
  RJ558_RS02400 (RJ558_02400) ilvC 502770..503762 (+) 993 WP_310957898.1 ketol-acid reductoisomerase -
  RJ558_RS02405 (RJ558_02405) minD 503786..504592 (+) 807 WP_001019049.1 septum site-determining protein MinD -
  RJ558_RS02410 (RJ558_02410) minE 504589..504822 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  RJ558_RS02415 (RJ558_02415) dprA 504829..505629 (+) 801 WP_180662752.1 DNA-processing protein DprA Machinery gene
  RJ558_RS02420 (RJ558_02420) dprB 505626..506030 (+) 405 WP_180662754.1 Holliday junction resolvase RuvX Machinery gene
  RJ558_RS02425 (RJ558_02425) - 506161..506729 (+) 569 Protein_472 tetratricopeptide repeat protein -
  RJ558_RS02430 (RJ558_02430) - 506915..507253 (+) 339 WP_180662755.1 hypothetical protein -
  RJ558_RS02435 (RJ558_02435) - 507237..507797 (+) 561 WP_180662757.1 hypothetical protein -
  RJ558_RS02440 (RJ558_02440) - 507899..508780 (-) 882 WP_180662759.1 pseudouridine synthase -
  RJ558_RS02445 (RJ558_02445) recJ 508780..510330 (-) 1551 WP_180662761.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15267.68 Da        Isoelectric Point: 8.2770

>NTDB_id=879954 RJ558_RS02420 WP_180662754.1 505626..506030(+) (dprB) [Helicobacter pylori strain ICDC15003s]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIEYFINLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=879954 RJ558_RS02420 WP_180662754.1 505626..506030(+) (dprB) [Helicobacter pylori strain ICDC15003s]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATTGCTGCACTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCCATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAATCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.761

100

0.978