Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OCX17_RS10235 Genome accession   NZ_AP024732
Coordinates   2064012..2064482 (-) Length   156 a.a.
NCBI ID   WP_000934765.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59621     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2059012..2069482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX17_RS10180 - 2059569..2059913 (-) 345 WP_000817289.1 HNH endonuclease -
  OCX17_RS10185 - 2059929..2060381 (-) 453 WP_000406191.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  OCX17_RS10190 - 2060496..2060966 (-) 471 WP_000282755.1 hypothetical protein -
  OCX17_RS10195 - 2060989..2061189 (-) 201 WP_001570807.1 DUF1514 family protein -
  OCX17_RS10200 - 2061189..2061839 (-) 651 WP_001005262.1 hypothetical protein -
  OCX17_RS10205 rinB 2061998..2062147 (-) 150 WP_000595265.1 transcriptional activator RinB -
  OCX17_RS10215 - 2062191..2062475 (-) 285 Protein_1979 SA1788 family PVL leukocidin-associated protein -
  OCX17_RS10220 - 2062488..2062892 (-) 405 WP_000401978.1 RusA family crossover junction endodeoxyribonuclease -
  OCX17_RS10225 - 2062901..2063113 (-) 213 WP_261933983.1 hypothetical protein -
  OCX17_RS10230 - 2063120..2063982 (-) 863 Protein_1982 DnaD domain protein -
  OCX17_RS10235 ssbA 2064012..2064482 (-) 471 WP_000934765.1 single-stranded DNA-binding protein Machinery gene
  OCX17_RS10240 - 2064483..2065100 (-) 618 WP_072353921.1 MBL fold metallo-hydrolase -
  OCX17_RS10245 - 2065181..2066101 (-) 921 WP_000138475.1 recombinase RecT -
  OCX17_RS10250 - 2066103..2068058 (-) 1956 WP_064138715.1 AAA family ATPase -
  OCX17_RS10255 - 2068055..2068318 (-) 264 WP_001205732.1 hypothetical protein -
  OCX17_RS10260 - 2068327..2068587 (-) 261 WP_000291488.1 DUF1108 family protein -
  OCX17_RS10265 - 2068680..2068841 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  OCX17_RS10270 - 2068838..2069158 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17673.54 Da        Isoelectric Point: 4.9627

>NTDB_id=87921 OCX17_RS10235 WP_000934765.1 2064012..2064482(-) (ssbA) [Staphylococcus aureus strain 59621]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=87921 OCX17_RS10235 WP_000934765.1 2064012..2064482(-) (ssbA) [Staphylococcus aureus strain 59621]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment