Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RIN70_RS07595 Genome accession   NZ_CP134147
Coordinates   1502905..1503495 (-) Length   196 a.a.
NCBI ID   WP_195623482.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497905..1508495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS07570 (RIN70_07570) - 1498417..1499181 (-) 765 WP_049491216.1 ABC transporter ATP-binding protein -
  RIN70_RS07575 (RIN70_07575) - 1499181..1500128 (-) 948 WP_003008278.1 branched-chain amino acid ABC transporter permease -
  RIN70_RS07580 (RIN70_07580) - 1500132..1501001 (-) 870 WP_021153669.1 branched-chain amino acid ABC transporter permease -
  RIN70_RS07585 (RIN70_07585) - 1501083..1502240 (-) 1158 WP_023918808.1 ABC transporter substrate-binding protein -
  RIN70_RS07590 (RIN70_07590) - 1502349..1502627 (-) 279 WP_023918810.1 DUF2129 domain-containing protein -
  RIN70_RS07595 (RIN70_07595) clpP 1502905..1503495 (-) 591 WP_195623482.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RIN70_RS07600 (RIN70_07600) upp 1503623..1504252 (-) 630 WP_195623483.1 uracil phosphoribosyltransferase -
  RIN70_RS07605 (RIN70_07605) mgtA 1504472..1507132 (-) 2661 WP_070588766.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21466.54 Da        Isoelectric Point: 4.5925

>NTDB_id=878881 RIN70_RS07595 WP_195623482.1 1502905..1503495(-) (clpP) [Streptococcus parasanguinis strain 30.8.10]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILAENSSQ
PIEKVHADAERDNWMSAQETLEYGFIDEIMANNKLG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=878881 RIN70_RS07595 WP_195623482.1 1502905..1503495(-) (clpP) [Streptococcus parasanguinis strain 30.8.10]
ATGATTCCAGTAGTTATTGAACAAACCAGCCGTGGAGAACGTTCTTACGATATTTATTCCCGTCTGTTGAAAGATCGGAT
TATCATGGTGACAGGTCCAGTTGAGGATCAAATGGCCAATTCGATTATTGCCCAATTGCTCTTCTTGGATGCTCAAGATA
ACACCAAAGATATCTATATGTATATCAATACCCCAGGAGGTTCTGTTTCAGCAGGTCTGGCTATCGTCGATACCATGAAC
TTTATCAAGTCAGATGTCCAAACCATTGTTATGGGGATGGCAGCTTCAATGGGGACTGTGATTGCGTCAAGTGGTGCGAA
AGGCAAACGTTTCATGTTGCCAAATGCTGAGTACATGATCCACCAACCAATGGGGGGCACTGGTGGCGGTACCCAACAAA
CCGATATGGCGATCGCAGCAGAACATTTGCTCAAAACACGGAATAACTTGGAAAAAATCCTTGCGGAAAATTCAAGTCAA
CCGATCGAAAAAGTGCATGCAGATGCAGAACGTGATAATTGGATGAGTGCGCAAGAAACTCTTGAATATGGCTTTATTGA
TGAAATCATGGCCAATAATAAATTGGGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

93.846

99.49

0.934
  clpP Streptococcus pneumoniae D39

93.846

99.49

0.934
  clpP Streptococcus pneumoniae R6

93.846

99.49

0.934
  clpP Streptococcus pneumoniae TIGR4

93.846

99.49

0.934
  clpP Streptococcus thermophilus LMG 18311

93.333

99.49

0.929
  clpP Streptococcus thermophilus LMD-9

93.333

99.49

0.929
  clpP Streptococcus pyogenes JRS4

88.205

99.49

0.878
  clpP Streptococcus pyogenes MGAS315

88.205

99.49

0.878
  clpP Streptococcus mutans UA159

86.667

99.49

0.862
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.103

99.49

0.837
  clpP Lactococcus lactis subsp. cremoris KW2

83.59

99.49

0.832
  clpP Bacillus subtilis subsp. subtilis str. 168

57.732

98.98

0.571
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571