Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   WOC71_RS12510 Genome accession   NZ_CP150754
Coordinates   2525199..2525786 (+) Length   195 a.a.
NCBI ID   WP_406818733.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22457     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2520199..2530786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC71_RS12495 (WOC71_12480) rapZ 2521676..2522588 (+) 913 Protein_2459 RNase adapter RapZ -
  WOC71_RS12500 (WOC71_12485) - 2522585..2523580 (+) 996 WP_001248939.1 YvcK family protein -
  WOC71_RS12505 (WOC71_12490) whiA 2523691..2524635 (+) 945 WP_000006551.1 DNA-binding protein WhiA -
  WOC71_RS12510 (WOC71_12495) clpP 2525199..2525786 (+) 588 WP_406818733.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  WOC71_RS12515 (WOC71_12500) - 2526029..2526931 (-) 903 WP_000816304.1 TIGR01777 family oxidoreductase -
  WOC71_RS12520 (WOC71_12505) - 2527634..2528257 (+) 624 WP_368409839.1 DUF4887 domain-containing protein -
  WOC71_RS12525 (WOC71_12510) - 2529119..2530132 (+) 1014 WP_000654030.1 sugar-binding transcriptional regulator -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21460.52 Da        Isoelectric Point: 4.7571

>NTDB_id=878709 WOC71_RS12510 WP_406818733.1 2525199..2525786(+) (clpP) [Staphylococcus aureus strain TUM22457]
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDT
IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ
SIEKIQKDTDCDNFLTAEEAKEYGLIDEVMVPETK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=878709 WOC71_RS12510 WP_406818733.1 2525199..2525786(+) (clpP) [Staphylococcus aureus strain TUM22457]
ATGAATTTAATTCCTACAGTTATTGAAACAACAAACCGCGGTGAACGTGCATATGATATATACTCACGTTTATTAAAAGA
CCGTATTATTATGTTAGGTTCACAAATTGATGACAACGTAGCAAATTCAATCGTATCACAGTTATTATTCTTACAAGCGC
AAGACTCAGAGAAAGATATTTATTTATACATTAATTCACCAGGTGGAAGTGTAACAGCTGGTTTTGCGATTTATGATACA
ATTCAACACATTAAACCTGATGTTCAAACAATTTGTATCGGTATGGCTGCATCAATGGGATCATTCTTATTAGCAGCTGG
TGCAAAAGGTAAACGTTTCGCGTTACCAAATGCAGAAGTAATGATTCACCAACCATTAGGTGGTGCTCAAGGACAAGCAA
CTGAAATCGAAATTGCTGCAAATCACATTTTAAAAACACGTGAAAAATTAAACCGCATTTTATCAGAGCGTACTGGTCAA
AGTATTGAAAAAATACAAAAAGACACAGATTGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGA
TGAAGTGATGGTACCTGAAACAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

80.526

97.436

0.785
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

96.41

0.651
  clpP Streptococcus pneumoniae Rx1

63.158

97.436

0.615
  clpP Streptococcus pneumoniae D39

63.158

97.436

0.615
  clpP Streptococcus pneumoniae R6

63.158

97.436

0.615
  clpP Streptococcus pneumoniae TIGR4

63.158

97.436

0.615
  clpP Streptococcus thermophilus LMG 18311

62.632

97.436

0.61
  clpP Streptococcus thermophilus LMD-9

62.632

97.436

0.61
  clpP Lactococcus lactis subsp. cremoris KW2

61.579

97.436

0.6
  clpP Streptococcus mutans UA159

60.733

97.949

0.595
  clpP Streptococcus pyogenes JRS4

60.526

97.436

0.59
  clpP Streptococcus pyogenes MGAS315

60.526

97.436

0.59
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

59.474

97.436

0.579