Detailed information NTG0878384

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: RGB74_RS12740
• Genome accession: NZ_CP134049
• Coordinates: 2579749..2580330 (-)
• Length: 193 a.a.
• NCBI ID: WP_310759680.1
• Uniprot ID: -
• Organism: Bacillus sp. NEB1478
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2574749..2585330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGB74_RS12720 (RGB74_12720)	-	2575850..2576938 (+)	1089	WP_310759676.1	AI-2E family transporter	-
RGB74_RS12725 (RGB74_12725)	-	2576972..2577823 (+)	852	WP_310759677.1	DUF1206 domain-containing protein	-
RGB74_RS12730 (RGB74_12730)	-	2577861..2578292 (-)	432	WP_310759678.1	VOC family protein	-
RGB74_RS12735 (RGB74_12735)	-	2578308..2579549 (-)	1242	WP_310759679.1	MFS transporter	-
RGB74_RS12740 (RGB74_12740)	clpP	2579749..2580330 (-)	582	WP_310759680.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
RGB74_RS12745 (RGB74_12745)	-	2580346..2580555 (-)	210	WP_310759681.1	hypothetical protein	-
RGB74_RS12750 (RGB74_12750)	-	2580552..2581154 (-)	603	WP_310759682.1	helix-turn-helix domain-containing protein	-
RGB74_RS12755 (RGB74_12755)	-	2581487..2581726 (-)	240	WP_310759683.1	hypothetical protein	-
RGB74_RS12760 (RGB74_12760)	thiW	2581800..2582291 (-)	492	WP_310762872.1	energy coupling factor transporter S component ThiW	-
RGB74_RS12765 (RGB74_12765)	thiE	2582322..2582993 (-)	672	WP_310759684.1	thiamine phosphate synthase	-
RGB74_RS12770 (RGB74_12770)	thiM	2582993..2583883 (-)	891	WP_310759685.1	hydroxyethylthiazole kinase	-
RGB74_RS12775 (RGB74_12775)	thiD	2583870..2584682 (-)	813	WP_310762873.1	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	-

Sequence

Protein

• Length: 193 a.a.
• Molecular weight: 21058.30 Da
• Isoelectric Point: 4.8467

>NTDB_id=878384 RGB74_RS12740 WP_310759680.1 2579749..2580330(-) (clpP) [Bacillus sp. NEB1478]
MNLIPMVVESTNRGERSYDIYSRLLKDRIIMLGSAIDDNVANSIVAQLLFLAAEDPDKDIAIYINSPGGSVTAGLAIYDT
IQYIKPDVSTICIGMAASMGAVLLVAGAEGKRYALPNAEVMIHQPLGGTQGQATDMAIHAKRILQTRELLNKIISDRSGQ
PIEKVEKDTDRDYFMSAEQALKYGIIDKVIDKI

Nucleotide

• Length: 582 bp

>NTDB_id=878384 RGB74_RS12740 WP_310759680.1 2579749..2580330(-) (clpP) [Bacillus sp. NEB1478]
ATGAACTTAATCCCAATGGTCGTTGAATCCACAAATCGTGGAGAACGTTCATATGATATTTACTCCAGACTATTAAAGGA
TCGTATTATTATGTTAGGCAGTGCAATCGATGATAATGTCGCAAATTCTATCGTGGCACAGCTTCTTTTCTTAGCGGCTG
AAGATCCTGACAAGGACATTGCAATCTATATCAATTCACCGGGCGGAAGTGTGACAGCAGGTCTGGCTATTTATGACACC
ATTCAATACATCAAACCAGATGTTTCGACGATTTGTATCGGAATGGCTGCATCAATGGGCGCTGTACTGTTAGTGGCAGG
GGCGGAAGGGAAACGTTATGCTCTTCCAAACGCAGAGGTGATGATTCACCAGCCGCTTGGAGGCACACAAGGACAGGCAA
CAGATATGGCGATTCATGCAAAACGAATTCTCCAAACACGCGAACTATTGAATAAAATTATCTCAGACCGCTCTGGCCAG
CCGATCGAAAAAGTAGAAAAAGATACAGATCGCGATTACTTCATGTCTGCAGAACAAGCATTAAAATACGGAATCATCGA
CAAAGTCATCGATAAGATTTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	76.842	98.446	0.756
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.789	98.446	0.648
clpP	Streptococcus thermophilus LMG 18311	61.579	98.446	0.606
clpP	Streptococcus thermophilus LMD-9	61.579	98.446	0.606
clpP	Streptococcus mutans UA159	59.896	99.482	0.596
clpP	Streptococcus pneumoniae D39	60.526	98.446	0.596
clpP	Streptococcus pneumoniae Rx1	60.526	98.446	0.596
clpP	Streptococcus pneumoniae R6	60.526	98.446	0.596
clpP	Streptococcus pneumoniae TIGR4	60.526	98.446	0.596
clpP	Streptococcus pyogenes JRS4	59.162	98.964	0.585
clpP	Streptococcus pyogenes MGAS315	59.162	98.964	0.585
clpP	Lactococcus lactis subsp. cremoris KW2	57.068	98.964	0.565
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.497	98.964	0.549