NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	RGB74_RS03895	Genome accession	NZ_CP134049
Coordinates	829900..830490 (-)	Length	196 a.a.
NCBI ID	WP_310761684.1	Uniprot ID	-
Organism	Bacillus sp. NEB1478
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 824900..835490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGB74_RS03870 (RGB74_03870)	whiA	825313..826254 (+)	942	WP_310762787.1	DNA-binding protein WhiA	-
RGB74_RS03875 (RGB74_03875)	-	826296..826553 (+)	258	WP_310761680.1	HPr family phosphocarrier protein	-
RGB74_RS03880 (RGB74_03880)	-	826694..826993 (+)	300	WP_310761681.1	hypothetical protein	-
RGB74_RS03885 (RGB74_03885)	trpE	827231..828757 (+)	1527	WP_310761682.1	anthranilate synthase component I	-
RGB74_RS03890 (RGB74_03890)	-	828871..829851 (+)	981	WP_310761683.1	zinc-binding dehydrogenase	-
RGB74_RS03895 (RGB74_03895)	clpP	829900..830490 (-)	591	WP_310761684.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
RGB74_RS03900 (RGB74_03900)	yvfG	830712..830927 (-)	216	WP_310761685.1	protein YvfG	-
RGB74_RS03905 (RGB74_03905)	cspD	831270..831470 (+)	201	WP_310258473.1	cold-shock protein CspD	-
RGB74_RS03910 (RGB74_03910)	rpoN	831635..832963 (+)	1329	WP_310761686.1	RNA polymerase factor sigma-54	-
RGB74_RS03915 (RGB74_03915)	-	833111..833356 (+)	246	WP_310761687.1	glutaredoxin family protein	-
RGB74_RS03920 (RGB74_03920)	-	833623..834642 (+)	1020	WP_310761688.1	sugar-binding domain-containing protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21572.80 Da Isoelectric Point: 4.8780

                                >NTDB_id=878361 RGB74_RS03895 WP_310761684.1 829900..830490(-) (clpP) [Bacillus sp. NEB1478]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVSNSIVAQLLFLAAEDPDKDISLYINSPGGSITAGMAIYDT

MNYIKPNVSTICIGMAASMGAFLLAAGEKGKRYVLPNSEVMIHQPLGGTRGQASDIEIHARRIIQMREQLNKILSEKTGQ

PLEVIERDTDRDNFLLAEDAVKYGLVDKLITSVDAK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=878361 RGB74_RS03895 WP_310761684.1 829900..830490(-) (clpP) [Bacillus sp. NEB1478]

ATGAATTTAATTCCAACAGTAATCGAACAAACGAACCGTGGGGAACGCGCATATGATATTTATTCCCGCTTGTTAAAAGA

TCGTATCATCATGCTTGGCAGCGCAATTGACGACAACGTTTCAAACTCTATCGTAGCACAGCTGTTATTCTTAGCTGCAG

AAGATCCGGATAAAGACATCTCATTGTACATAAACAGTCCAGGTGGATCCATTACAGCAGGTATGGCGATTTACGATACA

ATGAACTACATTAAGCCGAACGTTTCTACAATTTGTATCGGTATGGCAGCAAGTATGGGTGCATTCCTGCTTGCAGCTGG

AGAAAAAGGAAAACGTTACGTTCTTCCAAACTCTGAAGTTATGATTCACCAGCCACTAGGCGGTACACGCGGTCAAGCGA

GTGATATCGAAATCCACGCACGCCGTATCATTCAAATGCGTGAGCAGCTAAACAAAATCTTATCAGAAAAAACAGGTCAG

CCGCTTGAAGTTATTGAGCGTGATACTGATCGTGATAATTTCTTGCTTGCAGAAGATGCCGTTAAATACGGATTGGTTGA

TAAACTAATTACATCTGTTGATGCAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-191)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	82.653	100	0.827
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.426	95.918	0.628
clpP	Streptococcus mutans UA159	53.807	100	0.541
clpP	Streptococcus thermophilus LMG 18311	55.208	97.959	0.541
clpP	Streptococcus thermophilus LMD-9	55.208	97.959	0.541
clpP	Streptococcus pneumoniae R6	54.167	97.959	0.531
clpP	Streptococcus pneumoniae Rx1	54.167	97.959	0.531
clpP	Streptococcus pneumoniae D39	54.167	97.959	0.531
clpP	Streptococcus pneumoniae TIGR4	54.167	97.959	0.531
clpP	Lactococcus lactis subsp. cremoris KW2	54.211	96.939	0.526
clpP	Streptococcus pyogenes JRS4	52.551	100	0.526
clpP	Streptococcus pyogenes MGAS315	52.551	100	0.526
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	53.158	96.939	0.515

Detailed information NTG0878361