Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV49_RS00045 Genome accession   NZ_CP133988
Coordinates   9659..11644 (-) Length   661 a.a.
NCBI ID   WP_003010284.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain B-1756     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4659..16644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS00025 (RDV49_00025) amiF 5144..6070 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  RDV49_RS00030 (RDV49_00030) amiE 6081..7148 (-) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RDV49_RS00035 (RDV49_00035) amiD 7160..8086 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RDV49_RS00040 (RDV49_00040) amiC 8086..9585 (-) 1500 WP_003010287.1 ABC transporter permease Regulator
  RDV49_RS00045 (RDV49_00045) amiA3 9659..11644 (-) 1986 WP_003010284.1 peptide ABC transporter substrate-binding protein Regulator
  RDV49_RS00050 (RDV49_00050) - 11850..13091 (+) 1242 WP_003010281.1 serine hydrolase -
  RDV49_RS00055 (RDV49_00055) sufB 13150..14562 (-) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -
  RDV49_RS00060 (RDV49_00060) sufU 14595..15029 (-) 435 WP_003010276.1 Fe-S cluster assembly sulfur transfer protein SufU -
  RDV49_RS00065 (RDV49_00065) - 15016..16242 (-) 1227 WP_003010274.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72524.01 Da        Isoelectric Point: 5.2789

>NTDB_id=878135 RDV49_RS00045 WP_003010284.1 9659..11644(-) (amiA3) [Streptococcus parasanguinis strain B-1756]
MKKGKVFAVAGVTLLAAGLLAACSSSNTSKASSGEDKNYGYVYTTDPTTLDYTVSSKSATQDLTTNIVDGLMENDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEERGEVTAKDFVIGLKHAADKKSEELPLVQGSIKGLDDYVQGKTTDFS
QVGVKAVDDYTLQYTLNKPETFWNSKTTNGILFPISTDFLKSKGDDFGQPNDVKSVLANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHVKEVKLTYYDGSDQDSLARGFSDGAYTAARLFPSSSNFATVEKKYKDNIYNTPAGSGVAILGFNIDRQSYKH
TAKKSDAEKSSTKKAILNKDFRQAITFALNRENYSAQVNGKEFAKPAIRNTYVAPAFVQVDGKDFGNVVADKLTTYGDQW
KGINLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVIQNATSIVTRMQSLKQTVEETLGKDNVVVDLQMMDQ
DEVLNITLNVPSAADADWDLQGMVGWNPDYQDPSTYLDTLQPSSEDQTKVYLGFAGGVDNPSAKAVGLDEFAKLLDDANN
ETQDVVKRYEKYAAAQAWLTDSAIVVPTMSSSGAATVISKVVPFSGASAQAGNKGSAYFKYVEVQDEPVTKKQYDEALKK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=878135 RDV49_RS00045 WP_003010284.1 9659..11644(-) (amiA3) [Streptococcus parasanguinis strain B-1756]
ATGAAAAAAGGTAAAGTATTCGCAGTTGCCGGAGTAACACTCCTTGCAGCTGGATTGTTAGCTGCATGTTCTAGTTCAAA
TACTAGCAAAGCAAGCTCAGGCGAAGACAAAAACTATGGTTATGTCTACACTACTGACCCAACAACTTTGGACTATACTG
TGTCTTCTAAATCTGCCACTCAAGATCTCACTACAAACATCGTAGACGGTTTGATGGAAAATGACAAGTATGGAAATCTT
GTGCCATCACTTGCGGAAGATTGGTCTGTTTCAAAAGACGGTTTGACTTATACCTACAAGATTCGTAAGGGTGTTAAATG
GTACGATGCAGATGGTGAAGAACGCGGTGAAGTGACTGCCAAAGACTTCGTGATTGGTTTGAAACACGCTGCTGATAAAA
AATCAGAAGAACTTCCACTAGTTCAAGGCTCAATCAAAGGCTTGGATGATTATGTGCAAGGAAAAACTACAGACTTCAGC
CAAGTTGGTGTCAAAGCGGTTGATGATTACACACTTCAATATACATTGAACAAACCTGAAACCTTCTGGAACTCTAAAAC
AACAAACGGAATCTTGTTCCCAATTAGCACAGATTTCTTGAAGAGTAAGGGAGATGATTTTGGTCAACCAAACGATGTGA
AATCAGTACTTGCAAACGGACCTTTCCTTCTTAAATCTATTACATCAAAATCATCTGTTGTATTTGAAAAGAATGACAAC
TACTGGGATAAGAAAAACGTTCACGTCAAGGAAGTAAAACTTACTTATTACGATGGATCAGACCAAGATTCATTGGCACG
TGGTTTCTCTGATGGAGCTTATACAGCTGCTCGTCTTTTCCCATCAAGCTCAAACTTTGCAACAGTAGAGAAAAAATACA
AGGACAATATCTATAACACACCAGCTGGTTCAGGTGTAGCAATCCTTGGTTTCAACATCGATCGTCAATCTTACAAACAC
ACTGCAAAGAAATCAGATGCTGAAAAATCTTCTACTAAGAAAGCAATCTTGAACAAAGATTTCCGTCAAGCCATCACTTT
TGCCTTGAACCGTGAAAACTACTCAGCACAAGTCAATGGTAAAGAATTTGCTAAACCAGCTATCCGTAATACATATGTTG
CACCTGCATTCGTACAAGTAGATGGAAAAGACTTCGGAAATGTAGTTGCAGATAAGTTGACTACTTATGGAGACCAATGG
AAGGGTATCAACCTTGCAGATGGTCAAGATGGTCTTTACAACAAAGATAAAGCGAAAGCACAACTTGAAAAAGCCAAAGC
TGAACTTCAAAAAGACGGCGTTCAATTCCCAATTCATATTGACGTTCCTGTTATTCAAAATGCAACAAGTATAGTTACAC
GTATGCAATCATTGAAACAAACGGTAGAAGAAACTCTTGGTAAAGACAACGTAGTTGTTGACCTTCAAATGATGGACCAA
GACGAAGTGTTGAACATCACATTGAATGTTCCATCAGCTGCAGATGCAGATTGGGATCTTCAAGGTATGGTCGGTTGGAA
CCCAGACTATCAAGATCCATCAACTTACCTTGATACGCTTCAACCATCTTCAGAAGATCAAACAAAAGTTTACCTTGGTT
TTGCAGGTGGTGTAGATAACCCATCAGCTAAAGCTGTCGGTTTGGATGAGTTTGCAAAACTTCTTGACGATGCAAACAAC
GAAACACAAGATGTTGTGAAACGTTATGAAAAATATGCAGCAGCTCAAGCTTGGTTGACAGATAGCGCGATTGTAGTACC
TACAATGTCATCATCAGGCGCAGCAACTGTTATCTCTAAAGTGGTACCATTCTCTGGTGCTTCAGCTCAAGCTGGTAACA
AAGGTTCAGCATACTTCAAATATGTAGAAGTTCAAGATGAACCTGTTACTAAGAAACAATACGATGAAGCTCTTAAGAAA
TGGCAAAAAGAAAAAGCTGAGTCAAACAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.337

100

0.596
  amiA3 Streptococcus thermophilus LMG 18311

58.886

100

0.592
  amiA Streptococcus salivarius strain HSISS4

59.063

100

0.592