Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RDV49_RS00025 Genome accession   NZ_CP133988
Coordinates   5144..6070 (-) Length   308 a.a.
NCBI ID   WP_003010296.1    Uniprot ID   V8BAC4
Organism   Streptococcus parasanguinis strain B-1756     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 144..11070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS00025 (RDV49_00025) amiF 5144..6070 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  RDV49_RS00030 (RDV49_00030) amiE 6081..7148 (-) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RDV49_RS00035 (RDV49_00035) amiD 7160..8086 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RDV49_RS00040 (RDV49_00040) amiC 8086..9585 (-) 1500 WP_003010287.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35017.00 Da        Isoelectric Point: 6.2915

>NTDB_id=878131 RDV49_RS00025 WP_003010296.1 5144..6070(-) (amiF) [Streptococcus parasanguinis strain B-1756]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGEIIYDGRKINGKNSHS
EKSELIRKIQMIFQDPAASLNERATVDYIISEGLINHHLFNSEEERQEKVKNIMHEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKFQRELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
HPIHPYTQSLLSAVPIPDPILERKKVLKIYDPEQHDYSEDKPQMVEIKPGHYVWANKAEENKYRQEYK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=878131 RDV49_RS00025 WP_003010296.1 5144..6070(-) (amiF) [Streptococcus parasanguinis strain B-1756]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAAAAATTCGTTGCTGTAAAGAA
CGCCAACTTTTTCATTAATAAGGGAGAAACTTTCTCTCTTGTTGGTGAATCAGGAAGTGGGAAGACAACAATTGGACGTG
CGATCATCGGTTTGAATGATACAAGTGCTGGAGAAATTATTTATGATGGTCGCAAGATCAACGGAAAAAACTCTCATAGT
GAAAAATCAGAGTTGATCCGTAAAATTCAAATGATCTTCCAAGACCCAGCAGCAAGTTTGAATGAACGTGCAACAGTTGA
TTATATTATCTCTGAAGGTTTGATCAACCACCATTTGTTTAACAGTGAAGAAGAACGTCAGGAAAAAGTAAAAAATATTA
TGCATGAAGTTGGGCTTCTAGCAGAACATTTGACACGTTATCCTCACGAATTCTCAGGTGGTCAACGTCAACGGATCGGT
ATTGCCCGTGCACTTGTCATGGAACCAGAATTTGTCATTGCGGATGAACCAATCTCAGCCCTTGACGTTTCAGTACGTGC
GCAGGTCTTGAACCTTTTGAAAAAATTCCAAAGAGAATTAGGCTTGACCTACCTCTTTATCGCCCATGACTTGTCAGTTG
TACGCTTCATTTCTGATCGTATTGCAGTTATCTATAAAGGGGTTATTGTAGAAGTGGCAGAAACTGAAGAGCTATTTAAC
CACCCAATCCATCCATACACACAATCTCTACTTTCAGCAGTCCCAATTCCAGATCCAATTCTAGAACGTAAAAAAGTTCT
AAAAATCTACGATCCAGAACAACATGATTACTCTGAAGATAAACCACAAATGGTTGAAATTAAACCAGGTCATTATGTAT
GGGCTAATAAAGCTGAAGAAAACAAATACAGACAAGAATATAAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BAC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.641

99.351

0.841
  amiF Streptococcus thermophilus LMG 18311

84.314

99.351

0.838
  amiF Streptococcus thermophilus LMD-9

83.987

99.351

0.834