Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RDV49_RS00030 Genome accession   NZ_CP133988
Coordinates   6081..7148 (-) Length   355 a.a.
NCBI ID   WP_003010293.1    Uniprot ID   A0A3R9IVN1
Organism   Streptococcus parasanguinis strain B-1756     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081..12148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS00025 (RDV49_00025) amiF 5144..6070 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  RDV49_RS00030 (RDV49_00030) amiE 6081..7148 (-) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RDV49_RS00035 (RDV49_00035) amiD 7160..8086 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RDV49_RS00040 (RDV49_00040) amiC 8086..9585 (-) 1500 WP_003010287.1 ABC transporter permease Regulator
  RDV49_RS00045 (RDV49_00045) amiA3 9659..11644 (-) 1986 WP_003010284.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39500.04 Da        Isoelectric Point: 4.5938

>NTDB_id=878132 RDV49_RS00030 WP_003010293.1 6081..7148(-) (amiE) [Streptococcus parasanguinis strain B-1756]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELEEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAKEMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTHITE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=878132 RDV49_RS00030 WP_003010293.1 6081..7148(-) (amiE) [Streptococcus parasanguinis strain B-1756]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTATTGACAGC
TATTCGTGGCGTATCGCTTGAGCTAGAAGAAGGTGAAGTTCTTGCCTTAGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACGTTCACCGGAATGTTAGAAGATAACGGCCGTATTGCCCAAGGTTCGATTAAATACCGTGGTCAAGAATTG
ACAGATTTGAAATCGAATAAAGATTGGGAAAATATTCGTGGATCTAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGACCCAATCAACACAATTGGATCACAAATTACAGAAGTCATTATCAAACACCAAGGGAAAACAGCTAAAGAAGCCA
AAGAAATGGCTTTGGATTATATGGAGAAAGTTGGAATTCCAGATGCTGAACGTCGTTTTGATGAGTATCCATTCCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATCGCTCTGGCCTGCCGTCCAGATATCTTAATCTGTGACGAACCAAC
AACAGCCCTTGACGTAACCATTCAAGCGCAAATCATTGATTTGTTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGATTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGAGAAATTGTTGAG
TTTGGTAAAGTAGAAGAAATTTTCTACGATCCAAAACATCCATACACATGGAGCTTGCTTTCAAGCTTGCCTCAATTGTC
AACCTCAGATGGTGATCTTTACTCTATTCCAGGGACTCCGCCATCATTGTATGCTCCAATCAAAGGAGATGCCTTCGCAC
TTCGTTCAGATTATGCGATGCAGATTGATTTTGAAGAAGAGGCACCCGCTTTCAAAGTGACCGATACTCACTGGGCTAAG
ACATGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACTCACATTACAGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9IVN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.003

99.437

0.825
  amiE Streptococcus thermophilus LMG 18311

82.153

99.437

0.817
  amiE Streptococcus thermophilus LMD-9

82.153

99.437

0.817
  oppD Streptococcus mutans UA159

57.681

97.183

0.561