Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RDV49_RS00040 Genome accession   NZ_CP133988
Coordinates   8086..9585 (-) Length   499 a.a.
NCBI ID   WP_003010287.1    Uniprot ID   A0AAX4AXC0
Organism   Streptococcus parasanguinis strain B-1756     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3086..14585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS00025 (RDV49_00025) amiF 5144..6070 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  RDV49_RS00030 (RDV49_00030) amiE 6081..7148 (-) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RDV49_RS00035 (RDV49_00035) amiD 7160..8086 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RDV49_RS00040 (RDV49_00040) amiC 8086..9585 (-) 1500 WP_003010287.1 ABC transporter permease Regulator
  RDV49_RS00045 (RDV49_00045) amiA3 9659..11644 (-) 1986 WP_003010284.1 peptide ABC transporter substrate-binding protein Regulator
  RDV49_RS00050 (RDV49_00050) - 11850..13091 (+) 1242 WP_003010281.1 serine hydrolase -
  RDV49_RS00055 (RDV49_00055) sufB 13150..14562 (-) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55932.98 Da        Isoelectric Point: 10.0791

>NTDB_id=878134 RDV49_RS00040 WP_003010287.1 8086..9585(-) (amiC) [Streptococcus parasanguinis strain B-1756]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKSLQQKAS
KEDSSVTVDATTANEKIYKKYIEKLGHGWQLKRFPESKSFYAVREIPVFERVISFYANLIQFDHPGWVKDASNPNLKRYI
RIENDPSIGWSVVGSGTKHKYLLYFNGQFPYVHQNFVTLNLGNSYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKTSSI
DIYSRTYKSPSKADSQDISRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAIPLGSYMALFKDSWFDSISTAA
LTFMMSLPTIALVYIVRLAGSFFGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEREISRKHIFKNAMVPLVSGIPGAIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=878134 RDV49_RS00040 WP_003010287.1 8086..9585(-) (amiC) [Streptococcus parasanguinis strain B-1756]
ATGAAAAAATATGTTTTTATGCGTATTTTGCGTTCGTTAGTGTCGATCTTTCTCGTCACGACATTAACCTACATGATTAT
CTATACGCTAACACCGAGAAATCTCATCTTTAAAAATGACCCCAACTACAATAAAGTAGCGAAGACAAAAGATTCGAAGA
TCAACTACGAAAATACTGTCTACGATCGCATGGGTTATTTGGAATACATGGATTCAAAGAGCTTGCAACAAAAAGCAAGT
AAAGAAGATTCTTCCGTAACGGTTGATGCGACAACTGCTAATGAAAAGATCTACAAAAAATATATTGAAAAATTAGGTCA
TGGTTGGCAGTTGAAACGTTTCCCGGAAAGTAAGTCTTTCTATGCGGTGCGTGAAATTCCGGTTTTTGAACGTGTCATCA
GCTTCTATGCGAATTTGATTCAGTTTGATCATCCAGGTTGGGTGAAAGATGCCTCAAATCCAAATCTCAAACGCTATATC
CGTATTGAAAATGATCCATCTATTGGTTGGTCAGTTGTAGGTTCTGGTACGAAACACAAATACCTCTTGTACTTTAATGG
TCAATTCCCATATGTGCACCAAAACTTTGTAACCTTAAACCTTGGAAATTCATATCCAACTTATTCAAATACCCCTGTTC
TTCAAGTTATTACCCAAGGACAAGGAACGACTAAGAAGAGTGAAGTGAACTTCCCAACAGGTAAAAAGACATCTTCCATC
GATATCTACTCACGTACCTACAAATCACCAAGTAAGGCAGACTCACAAGATATCAGTCGATTTGGTAAAGGGGATGCCTA
TACAGCAACGTTGAGCAACTATGAGAATCCATCCATGATTGCATCTTCTTCAATCATTGGTTTGATTGGTATTGCGATTG
CTTACTTGATTGCGATCCCATTAGGATCTTACATGGCTCTGTTCAAGGACTCATGGTTTGATAGCATCTCTACTGCGGCT
TTGACATTTATGATGTCTCTCCCAACCATTGCCCTTGTCTATATCGTGCGTCTAGCAGGTTCATTCTTTGGACTTCCAGA
CTCATTCCCAGTACTTGGAGCACAGGACTGGCGTTCATATGTATTGCCGTCTCTGATTCTTGGTTTATTGAGTGCGCCAT
TTATCGCCGTTTGGATTCGTCGTTACATGATCGATATTCACTCTCAGGATTTCGTCCGTTTTGCTCGTTCAAAAGGATTG
TCAGAACGTGAGATCTCAAGAAAACACATCTTCAAAAATGCGATGGTTCCACTAGTTTCTGGAATTCCAGGGGCTATCAT
TGGAGTTATCTCAGGTGCGACGTTGACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAACAACACCATGGTCATCGGACTTGTCTTCATCTTCACATCACTTGGTATCTTTGCTGCCATGTTAGGTGAT
ATCTTGATGACAGTGCTTGATCCACGGATTAAATTAACGAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

71.142

100

0.711
  amiC Streptococcus thermophilus LMD-9

70.942

100

0.709
  amiC Streptococcus thermophilus LMG 18311

70.942

100

0.709