Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RDV49_RS00035 Genome accession   NZ_CP133988
Coordinates   7160..8086 (-) Length   308 a.a.
NCBI ID   WP_003010290.1    Uniprot ID   A0AB39LCL1
Organism   Streptococcus parasanguinis strain B-1756     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2160..13086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS00025 (RDV49_00025) amiF 5144..6070 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  RDV49_RS00030 (RDV49_00030) amiE 6081..7148 (-) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  RDV49_RS00035 (RDV49_00035) amiD 7160..8086 (-) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  RDV49_RS00040 (RDV49_00040) amiC 8086..9585 (-) 1500 WP_003010287.1 ABC transporter permease Regulator
  RDV49_RS00045 (RDV49_00045) amiA3 9659..11644 (-) 1986 WP_003010284.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34580.61 Da        Isoelectric Point: 9.8986

>NTDB_id=878133 RDV49_RS00035 WP_003010290.1 7160..8086(-) (amiD) [Streptococcus parasanguinis strain B-1756]
MATIDKNKFQFVKRDDFASEVIDAPAYSYWKSVFRQFLKKRTTIIMLAILIGILLMSFVYPMFSNFDYNDVSKVNDFSAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATVINVVVGVIVGGIWGISKSIDRIMMEVYNVISNIPFMLIVIV
LTYSMGSGFWNLILAMSLTGWIGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTQTSQLLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLILVSLSFFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=878133 RDV49_RS00035 WP_003010290.1 7160..8086(-) (amiD) [Streptococcus parasanguinis strain B-1756]
ATGGCTACAATCGATAAAAATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGTAATCGATGCTCCAGCGTA
TTCATACTGGAAATCTGTATTCAGACAATTCTTGAAAAAAAGAACCACTATCATTATGCTTGCTATTTTGATTGGGATTC
TCTTGATGAGTTTTGTCTACCCGATGTTTTCAAATTTTGATTACAACGACGTAAGTAAGGTAAATGACTTTTCAGCACGT
TTGAATCCACCAAGTGCCAAAGCTTTCTTTGGTACAGATAATAACGGTAAATCCCTCTTTGATGGAGTTTGGTTTGGTGC
TCGGAATTCAATTATCATTTCCTTCATCGCCACTGTTATTAACGTGGTTGTCGGAGTTATCGTTGGTGGAATTTGGGGGA
TCTCAAAATCCATCGACCGTATCATGATGGAAGTTTATAACGTTATTTCAAACATTCCGTTTATGTTGATCGTTATCGTC
TTGACTTACTCAATGGGATCTGGTTTCTGGAACTTGATTCTTGCCATGTCCTTAACTGGATGGATCGGAATTGCCTATAC
CATTCGTGTCCAAATCATGCGTTACCGTGATTTGGAGTACAACCTTGCCAGCCGAACATTAGGAACACCAACTTTGAAAA
TTGTTACGAAAAATATTTTGCCTCAATTGGTATCTGTTATCGTGACACAAACATCACAGTTACTTCCAAGCTTTATTTCT
TATGAAGCTTTCCTTTCCTTCTTCGGACTTGGTCTTCCAATCACAGTTCCAAGTTTGGGACGCTTGATTTCTGACTATTC
TCAAAACGTAACTACAAATGCCTACCTATTCTGGATTCCGCTTACTGTTTTGATTTTAGTATCCTTGTCATTCTTTATCG
TCGGACAAAACTTGGCCGATGCCAGCGACCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

79.545

100

0.795
  amiD Streptococcus thermophilus LMG 18311

78.247

100

0.782
  amiD Streptococcus thermophilus LMD-9

78.247

100

0.782