Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   RIM63_RS07035 Genome accession   NZ_CP133952
Coordinates   1466460..1467170 (-) Length   236 a.a.
NCBI ID   WP_012677635.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461460..1472170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS07020 (RIM63_07020) - 1461878..1463389 (-) 1512 WP_317583514.1 helix-turn-helix domain-containing protein -
  RIM63_RS07025 (RIM63_07025) vicX 1464302..1465111 (-) 810 WP_301899387.1 MBL fold metallo-hydrolase Regulator
  RIM63_RS07030 (RIM63_07030) vicK 1465115..1466467 (-) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RIM63_RS07035 (RIM63_07035) vicR 1466460..1467170 (-) 711 WP_012677635.1 response regulator YycF Regulator
  RIM63_RS07040 (RIM63_07040) - 1467379..1468395 (-) 1017 WP_317583517.1 DUF3114 domain-containing protein -
  RIM63_RS07045 (RIM63_07045) - 1468441..1469703 (-) 1263 WP_317583519.1 AMP-binding protein -
  RIM63_RS07050 (RIM63_07050) - 1469693..1470808 (-) 1116 WP_317583520.1 acetyl-CoA C-acyltransferase -
  RIM63_RS07055 (RIM63_07055) - 1470805..1471344 (-) 540 WP_317583522.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26967.81 Da        Isoelectric Point: 4.9038

>NTDB_id=877772 RIM63_RS07035 WP_012677635.1 1466460..1467170(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain HT321]
MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=877772 RIM63_RS07035 WP_012677635.1 1466460..1467170(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGAAGAAAATACTGATTGTTGATGATGAAAAGCCGATTTCTGATATCATTAAATTTAATCTGACAAAGGAAGGCTATGA
TACGGTCACAGCATTTGATGGCAAAGAGGCCGTTGCAGTCTTTGAAGAGGAAAAGCCAGATTTGATTATTTTGGATTTGA
TGCTTCCTGAATTAGATGGCCTTGAGGTAGCCAAGGAAATCCGCAAGACCAGCCATATTCCTATCATCATGCTATCTGCT
AAGGATAGCGAATTTGATAAGGTGATTGGACTTGAAATAGGGGCTGATGATTATGTGACTAAGCCCTTTTCAAATCGTGA
GCTGCTGGCGCGTGTCAAGGCACATTTGCGTCGGACAGAGACTATTGAGACAGCAGTAGCCGAAGAAAATGCCTCCTCAG
GCTCTCAGGAGCTGACCATCGGCAATCTACAGATTTTACCAGATGCCTTTATCGCTAAAAAGCATGGTCAAGAGGTTGAG
CTGACCCATCGTGAATTTGAATTGTTGCATCACCTGGCAAACCATATTGGACAGGTCATGACACGTGAGCATTTGCTTGA
GACCGTATGGGGCTATGATTATTTTGGCGATGTCCGAACCGTTGACGTTACTGTCCGTCGCCTGCGTGAAAAAATAGAGG
ACACACCGAGTCGTCCGGAGTACATCTTGACAAGACGTGGTGTTGGGTACTATATGAAGGCTTATGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

89.407

100

0.894
  micA Streptococcus pneumoniae Cp1015

78.541

98.729

0.775
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  covR Streptococcus salivarius strain HSISS4

43.966

98.305

0.432
  scnR Streptococcus mutans UA159

37.607

99.153

0.373