Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RIM63_RS07025 Genome accession   NZ_CP133952
Coordinates   1464302..1465111 (-) Length   269 a.a.
NCBI ID   WP_301899387.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459302..1470111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS07015 (RIM63_07015) rnc 1460927..1461619 (-) 693 WP_038674782.1 ribonuclease III -
  RIM63_RS07020 (RIM63_07020) - 1461878..1463389 (-) 1512 WP_317583514.1 helix-turn-helix domain-containing protein -
  RIM63_RS07025 (RIM63_07025) vicX 1464302..1465111 (-) 810 WP_301899387.1 MBL fold metallo-hydrolase Regulator
  RIM63_RS07030 (RIM63_07030) vicK 1465115..1466467 (-) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RIM63_RS07035 (RIM63_07035) vicR 1466460..1467170 (-) 711 WP_012677635.1 response regulator YycF Regulator
  RIM63_RS07040 (RIM63_07040) - 1467379..1468395 (-) 1017 WP_317583517.1 DUF3114 domain-containing protein -
  RIM63_RS07045 (RIM63_07045) - 1468441..1469703 (-) 1263 WP_317583519.1 AMP-binding protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29966.98 Da        Isoelectric Point: 5.5317

>NTDB_id=877770 RIM63_RS07025 WP_301899387.1 1464302..1465111(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain HT321]
MSEDGFKYSILASGSTGNCFYLETPKRRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGIMARKYNLD
VYANEKTWQMIDERHMIGNLDVAQKHVFERGKTMTFGDIDIESFGVSHDAVDPQFYRIMKDNRSFVMLTDTGYVSDRLAG
IIANADGYLIESNHDVEILRAGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGNKTKKIYLGHLSQENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=877770 RIM63_RS07025 WP_301899387.1 1464302..1465111(-) (vicX) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGAGTGAGGATGGCTTTAAATATAGTATTTTAGCATCAGGATCGACAGGTAACTGCTTTTACTTGGAAACGCCCAAGAG
GCGATTGTTGATTGATGCAGGGCTGACTGGCAAGAAAATCACCAGTCTCCTTGCTGAGATTGATAGAAAGCCTGAGGATT
TAGATGCTATCTTGATTACCCACGAGCATTCCGACCATATTAAGGGCGTTGGAATCATGGCTCGAAAATATAACCTAGAC
GTCTATGCCAATGAAAAGACTTGGCAGATGATTGATGAGCGTCATATGATTGGTAACCTAGACGTAGCACAAAAGCATGT
CTTTGAAAGAGGTAAGACCATGACCTTTGGAGACATTGACATTGAGAGCTTTGGTGTTAGTCATGACGCTGTAGACCCAC
AGTTTTACCGCATTATGAAGGACAACAGGTCCTTTGTCATGCTGACAGATACAGGATATGTGAGTGACCGCTTGGCCGGA
ATCATTGCAAATGCTGATGGCTACTTGATTGAGTCAAATCACGATGTAGAGATATTGCGAGCCGGCTCATACCCTTGGAG
CCTAAAGCAGCGAATCTTATCTGATCTAGGGCATTTATCCAATGAAGATGGTGCTGGCGCTATGATTCGAAGCTTGGGCA
ACAAAACAAAGAAAATCTACCTCGGTCACCTAAGCCAGGAGAACAATATCAAAGAATTAGCCCACATGACAATGGTCAAT
CAGCTAGCAATGGCAGATTTAGGTGTTGGAACAGATTTTACTGTTCATGATACCTCACCAGATACCGCCTGCCCCTTGAC
AGACATCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

74.349

100

0.743