Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   RIM64_RS08165 Genome accession   NZ_CP133951
Coordinates   1715634..1715813 (-) Length   59 a.a.
NCBI ID   WP_050319824.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1714512..1757550 1715634..1715813 within 0


Gene organization within MGE regions


Location: 1714512..1757550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS08160 (RIM64_08160) - 1714512..1715027 (+) 516 WP_021320424.1 hypothetical protein -
  RIM64_RS08165 (RIM64_08165) prx 1715634..1715813 (-) 180 WP_050319824.1 hypothetical protein Regulator
  RIM64_RS08170 (RIM64_08170) - 1716046..1717038 (+) 993 WP_015986728.1 DNA/RNA non-specific endonuclease -
  RIM64_RS08175 (RIM64_08175) - 1717101..1717910 (-) 810 WP_015986727.1 hypothetical protein -
  RIM64_RS08180 (RIM64_08180) - 1717901..1718422 (-) 522 WP_015986726.1 Panacea domain-containing protein -
  RIM64_RS08185 (RIM64_08185) - 1718575..1719777 (-) 1203 WP_015986725.1 glucosaminidase domain-containing protein -
  RIM64_RS08190 (RIM64_08190) - 1719893..1720120 (-) 228 WP_003058873.1 phage holin -
  RIM64_RS08195 (RIM64_08195) - 1720117..1720392 (-) 276 WP_002987582.1 hypothetical protein -
  RIM64_RS08200 (RIM64_08200) - 1720402..1721013 (-) 612 WP_050317156.1 hypothetical protein -
  RIM64_RS08205 (RIM64_08205) - 1721016..1721447 (-) 432 WP_015986722.1 DUF1617 family protein -
  RIM64_RS08210 (RIM64_08210) - 1721456..1723360 (-) 1905 WP_214494841.1 gp58-like family protein -
  RIM64_RS08215 (RIM64_08215) - 1723379..1724479 (-) 1101 WP_015986720.1 hyaluronidase -
  RIM64_RS08220 (RIM64_08220) - 1724479..1726461 (-) 1983 WP_015986719.1 phage tail protein -
  RIM64_RS08225 (RIM64_08225) - 1726471..1727313 (-) 843 WP_015986718.1 phage tail family protein -
  RIM64_RS08230 (RIM64_08230) - 1727325..1731482 (-) 4158 WP_015986717.1 tape measure protein -
  RIM64_RS08235 (RIM64_08235) - 1731497..1731730 (-) 234 WP_002983445.1 hypothetical protein -
  RIM64_RS08240 (RIM64_08240) - 1731805..1732260 (-) 456 WP_002983443.1 tail assembly chaperone -
  RIM64_RS08245 (RIM64_08245) - 1732314..1732913 (-) 600 WP_002983441.1 phage major tail protein, TP901-1 family -
  RIM64_RS08250 (RIM64_08250) - 1732925..1733284 (-) 360 WP_002983439.1 hypothetical protein -
  RIM64_RS08255 (RIM64_08255) - 1733288..1733632 (-) 345 WP_050317072.1 HK97-gp10 family putative phage morphogenesis protein -
  RIM64_RS08260 (RIM64_08260) - 1733629..1733907 (-) 279 WP_000639437.1 hypothetical protein -
  RIM64_RS08265 (RIM64_08265) - 1733918..1734274 (-) 357 WP_002983431.1 phage head-tail connector protein -
  RIM64_RS08270 (RIM64_08270) - 1734286..1735173 (-) 888 WP_002983429.1 hypothetical protein -
  RIM64_RS08275 (RIM64_08275) - 1735186..1735755 (-) 570 WP_002983425.1 DUF4355 domain-containing protein -
  RIM64_RS08280 (RIM64_08280) - 1735911..1736177 (-) 267 WP_050317087.1 hypothetical protein -
  RIM64_RS08285 (RIM64_08285) - 1736180..1736368 (-) 189 WP_002983423.1 hypothetical protein -
  RIM64_RS08290 (RIM64_08290) - 1736399..1737844 (-) 1446 WP_050317145.1 minor capsid protein -
  RIM64_RS08295 (RIM64_08295) - 1737804..1739336 (-) 1533 WP_023611655.1 phage portal protein -
  RIM64_RS08300 (RIM64_08300) - 1739352..1740629 (-) 1278 WP_050318640.1 PBSX family phage terminase large subunit -
  RIM64_RS08305 (RIM64_08305) - 1740619..1741071 (-) 453 WP_011106637.1 terminase small subunit -
  RIM64_RS08310 (RIM64_08310) - 1741161..1741577 (-) 417 WP_002988747.1 DUF722 domain-containing protein -
  RIM64_RS08315 (RIM64_08315) - 1741780..1742049 (-) 270 WP_050317163.1 hypothetical protein -
  RIM64_RS08320 (RIM64_08320) - 1742049..1742222 (-) 174 WP_015986713.1 hypothetical protein -
  RIM64_RS08325 (RIM64_08325) - 1742219..1742386 (-) 168 WP_015986712.1 hypothetical protein -
  RIM64_RS08330 (RIM64_08330) - 1742387..1743709 (-) 1323 WP_015986711.1 SNF2-related protein -
  RIM64_RS08335 (RIM64_08335) - 1743706..1743981 (-) 276 WP_002988730.1 VRR-NUC domain-containing protein -
  RIM64_RS08340 (RIM64_08340) - 1744348..1746732 (-) 2385 WP_050317067.1 phage/plasmid primase, P4 family -
  RIM64_RS08345 (RIM64_08345) - 1746737..1748659 (-) 1923 WP_015986708.1 DNA polymerase -
  RIM64_RS08350 (RIM64_08350) - 1748702..1749265 (-) 564 WP_002983410.1 DUF2815 family protein -
  RIM64_RS08355 (RIM64_08355) - 1749279..1750436 (-) 1158 WP_015986706.1 DUF2800 domain-containing protein -
  RIM64_RS08360 (RIM64_08360) - 1750436..1750735 (-) 300 WP_002988708.1 hypothetical protein -
  RIM64_RS08365 (RIM64_08365) - 1750823..1751026 (-) 204 WP_002983407.1 hypothetical protein -
  RIM64_RS08370 (RIM64_08370) - 1751023..1751175 (-) 153 WP_002983406.1 hypothetical protein -
  RIM64_RS08375 (RIM64_08375) - 1751172..1751555 (-) 384 WP_002983405.1 hypothetical protein -
  RIM64_RS08380 (RIM64_08380) - 1751552..1751758 (-) 207 WP_050317062.1 hypothetical protein -
  RIM64_RS08385 (RIM64_08385) - 1751751..1751921 (-) 171 WP_015986705.1 hypothetical protein -
  RIM64_RS08390 (RIM64_08390) - 1751918..1752193 (-) 276 WP_015986704.1 hypothetical protein -
  RIM64_RS08395 (RIM64_08395) - 1752259..1752459 (-) 201 WP_231146360.1 hypothetical protein -
  RIM64_RS08400 (RIM64_08400) - 1752510..1752701 (-) 192 WP_001283052.1 hypothetical protein -
  RIM64_RS08405 (RIM64_08405) - 1753457..1753816 (+) 360 WP_015986702.1 helix-turn-helix domain-containing protein -
  RIM64_RS08410 (RIM64_08410) - 1753830..1754213 (+) 384 WP_015986701.1 ImmA/IrrE family metallo-endopeptidase -
  RIM64_RS08415 (RIM64_08415) - 1754224..1754775 (+) 552 WP_015986700.1 hypothetical protein -
  RIM64_RS08420 (RIM64_08420) - 1754894..1755973 (+) 1080 WP_015986699.1 tyrosine-type recombinase/integrase -
  RIM64_RS08430 (RIM64_08430) - 1756294..1757550 (+) 1257 WP_231148149.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6931.74 Da        Isoelectric Point: 3.8957

>NTDB_id=877724 RIM64_RS08165 WP_050319824.1 1715634..1715813(-) (prx) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MLTYDEFKQAIDDGYITGDTVAIVRKNGQIFDYVLPHEEVRSWEVSIEEIVEEVLRELE

Nucleotide


Download         Length: 180 bp        

>NTDB_id=877724 RIM64_RS08165 WP_050319824.1 1715634..1715813(-) (prx) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGCTAACATACGACGAATTTAAACAGGCAATTGATGACGGATATATCACAGGAGACACAGTAGCGATCGTGCGCAAAAA
CGGACAGATTTTTGATTATGTATTGCCGCATGAGGAAGTGAGGTCGTGGGAGGTGTCAATAGAAGAAATAGTGGAAGAAG
TGCTGCGGGAATTGGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

84.746

100

0.847
  prx Streptococcus pyogenes MGAS315

79.661

100

0.797
  prx Streptococcus pyogenes MGAS8232

79.31

98.305

0.78
  prx Streptococcus pyogenes MGAS315

74.138

98.305

0.729
  prx Streptococcus pyogenes MGAS315

90.476

71.186

0.644
  prx Streptococcus pyogenes MGAS315

88.095

71.186

0.627
  prx Streptococcus pyogenes MGAS315

82.927

69.492

0.576