Detailed information NTG0877679

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: RIM64_RS00695
• Genome accession: NZ_CP133951
• Coordinates: 118954..119988 (+)
• Length: 344 a.a.
• NCBI ID: WP_228273970.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain JMC111
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 113954..124988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM64_RS00675 (RIM64_00675)	-	114341..114706 (+)	366	WP_165619319.1	DUF1033 family protein	-
RIM64_RS00680 (RIM64_00680)	-	115251..117254 (+)	2004	WP_012677231.1	DUF1430 domain-containing protein	-
RIM64_RS00685 (RIM64_00685)	-	117256..117903 (+)	648	WP_012677232.1	ATP-binding cassette domain-containing protein	-
RIM64_RS00690 (RIM64_00690)	comGA/cglA	118083..119021 (+)	939	WP_012677233.1	competence type IV pilus ATPase ComGA	Machinery gene
RIM64_RS00695 (RIM64_00695)	comYB	118954..119988 (+)	1035	WP_228273970.1	competence type IV pilus assembly protein ComGB	Machinery gene
RIM64_RS00700 (RIM64_00700)	comGC/cglC	119989..120312 (+)	324	WP_012677235.1	competence type IV pilus major pilin ComGC	Machinery gene
RIM64_RS00705 (RIM64_00705)	comGD	120290..120715 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
RIM64_RS00710 (RIM64_00710)	comGE	120720..120962 (+)	243	WP_012677236.1	competence type IV pilus minor pilin ComGE	-
RIM64_RS00715 (RIM64_00715)	comYF	120949..121383 (+)	435	WP_115266549.1	competence type IV pilus minor pilin ComGF	Machinery gene
RIM64_RS00720 (RIM64_00720)	comGG	121361..121723 (+)	363	WP_115266550.1	competence type IV pilus minor pilin ComGG	-
RIM64_RS00725 (RIM64_00725)	comYH	121785..122738 (+)	954	WP_165619320.1	class I SAM-dependent methyltransferase	Machinery gene
RIM64_RS00730 (RIM64_00730)	-	122798..124000 (+)	1203	WP_115266552.1	acetate kinase	-
RIM64_RS00735 (RIM64_00735)	-	124370..124984 (-)	615	WP_042669829.1	hypothetical protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39473.73 Da
• Isoelectric Point: 9.4455

>NTDB_id=877679 RIM64_RS00695 WP_228273970.1 118954..119988(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLPPIYVANMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNVLTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGALLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLL
VAVIIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=877679 RIM64_RS00695 WP_228273970.1 118954..119988(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain JMC111]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGTTTTAATTTAACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TCTTGCCACCAATCTATGTTGCAAATATGGAAGCAAGCCTATTAAAGGGCAATGGCCTTGCTGATATGCTGGCAGCCTTA
GGCTACTCTGATGCTGTCATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGTCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCCAGGTCCTG
TAGCAGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGAGCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTACTG
GTTGCTGTGATTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.572	98.547	0.538
comYB	Streptococcus mutans UA159	54.572	98.547	0.538
comYB	Streptococcus gordonii str. Challis substr. CH1	52.647	98.837	0.52
comGB/cglB	Streptococcus mitis SK321	48.649	96.802	0.471
comGB/cglB	Streptococcus mitis NCTC 12261	48.503	97.093	0.471
comGB/cglB	Streptococcus pneumoniae Rx1	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae D39	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae R6	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae TIGR4	48.348	96.802	0.468
comGB	Lactococcus lactis subsp. cremoris KW2	46.018	98.547	0.453