Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   RIM64_RS00715 Genome accession   NZ_CP133951
Coordinates   120949..121383 (+) Length   144 a.a.
NCBI ID   WP_115266549.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 115949..126383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS00685 (RIM64_00685) - 117256..117903 (+) 648 WP_012677232.1 ATP-binding cassette domain-containing protein -
  RIM64_RS00690 (RIM64_00690) comGA/cglA 118083..119021 (+) 939 WP_012677233.1 competence type IV pilus ATPase ComGA Machinery gene
  RIM64_RS00695 (RIM64_00695) comYB 118954..119988 (+) 1035 WP_228273970.1 competence type IV pilus assembly protein ComGB Machinery gene
  RIM64_RS00700 (RIM64_00700) comGC/cglC 119989..120312 (+) 324 WP_012677235.1 competence type IV pilus major pilin ComGC Machinery gene
  RIM64_RS00705 (RIM64_00705) comGD 120290..120715 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  RIM64_RS00710 (RIM64_00710) comGE 120720..120962 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  RIM64_RS00715 (RIM64_00715) comYF 120949..121383 (+) 435 WP_115266549.1 competence type IV pilus minor pilin ComGF Machinery gene
  RIM64_RS00720 (RIM64_00720) comGG 121361..121723 (+) 363 WP_115266550.1 competence type IV pilus minor pilin ComGG -
  RIM64_RS00725 (RIM64_00725) comYH 121785..122738 (+) 954 WP_165619320.1 class I SAM-dependent methyltransferase Machinery gene
  RIM64_RS00730 (RIM64_00730) - 122798..124000 (+) 1203 WP_115266552.1 acetate kinase -
  RIM64_RS00735 (RIM64_00735) - 124370..124984 (-) 615 WP_042669829.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16171.70 Da        Isoelectric Point: 10.1988

>NTDB_id=877681 RIM64_RS00715 WP_115266549.1 120949..121383(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITAVGQQVTIKLKWQSGLERTFIYVFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=877681 RIM64_RS00715 WP_115266549.1 120949..121383(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain JMC111]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGTTATCAGCCCATGCT
GTTTGGCTTATCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTGACCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGTATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

51.389

100

0.514
  comYF Streptococcus mutans UA159

50.694

100

0.507
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

49.635

95.139

0.472
  comGF Lactococcus lactis subsp. cremoris KW2

47.143

97.222

0.458
  comGF/cglF Streptococcus pneumoniae D39

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae R6

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae TIGR4

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae Rx1

48.175

95.139

0.458