Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | OCX22_RS10530 | Genome accession | NZ_AP024723 |
| Coordinates | 2110607..2111077 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934765.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 59458 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2082076..2136568 | 2110607..2111077 | within | 0 |
Gene organization within MGE regions
Location: 2082076..2136568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCX22_RS10345 (SA59458_19600) | scn | 2082076..2082426 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| OCX22_RS10350 (SA59458_19610) | - | 2082938..2083276 (-) | 339 | Protein_2005 | SH3 domain-containing protein | - |
| OCX22_RS10355 (SA59458_19620) | sak | 2083924..2084415 (-) | 492 | WP_000920038.1 | staphylokinase | - |
| OCX22_RS10360 (SA59458_19630) | - | 2084606..2085361 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| OCX22_RS10365 (SA59458_19640) | - | 2085373..2085627 (-) | 255 | WP_000611512.1 | phage holin | - |
| OCX22_RS10370 | - | 2085675..2085782 (+) | 108 | WP_031762631.1 | hypothetical protein | - |
| OCX22_RS10375 (SA59458_19650) | pepG1 | 2085835..2085969 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| OCX22_RS10380 (SA59458_19660) | sea | 2086120..2086893 (-) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| OCX22_RS10385 (SA59458_19670) | - | 2087266..2087640 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| OCX22_RS10390 (SA59458_19680) | - | 2087696..2087983 (-) | 288 | WP_001262621.1 | hypothetical protein | - |
| OCX22_RS10395 (SA59458_19690) | - | 2088029..2088181 (-) | 153 | WP_001000058.1 | hypothetical protein | - |
| OCX22_RS10400 (SA59458_19700) | - | 2088174..2091956 (-) | 3783 | WP_117219101.1 | phage tail spike protein | - |
| OCX22_RS10405 (SA59458_19710) | - | 2091972..2093462 (-) | 1491 | WP_001154317.1 | phage distal tail protein | - |
| OCX22_RS10410 (SA59458_19720) | - | 2093462..2098111 (-) | 4650 | WP_261921369.1 | phage tail tape measure protein | - |
| OCX22_RS10415 | gpGT | 2098167..2098289 (-) | 123 | WP_000570353.1 | phage tail assembly chaperone GT | - |
| OCX22_RS10420 (SA59458_19730) | gpG | 2098349..2098795 (-) | 447 | WP_000442601.1 | phage tail assembly chaperone G | - |
| OCX22_RS10425 (SA59458_19740) | - | 2098860..2099813 (-) | 954 | WP_000570652.1 | major tail protein | - |
| OCX22_RS10430 (SA59458_19750) | - | 2099814..2100194 (-) | 381 | WP_000611454.1 | hypothetical protein | - |
| OCX22_RS10435 (SA59458_19760) | - | 2100191..2100568 (-) | 378 | WP_000501244.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| OCX22_RS10440 (SA59458_19770) | - | 2100568..2100903 (-) | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| OCX22_RS10445 (SA59458_19780) | - | 2100890..2101222 (-) | 333 | WP_001177483.1 | head-tail connector protein | - |
| OCX22_RS10450 (SA59458_19790) | - | 2101231..2101389 (-) | 159 | WP_001252099.1 | hypothetical protein | - |
| OCX22_RS10455 (SA59458_19800) | - | 2101425..2102672 (-) | 1248 | WP_000849950.1 | phage major capsid protein | - |
| OCX22_RS10460 (SA59458_19810) | - | 2102760..2103344 (-) | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| OCX22_RS10465 (SA59458_19820) | - | 2103337..2104587 (-) | 1251 | WP_000511067.1 | phage portal protein | - |
| OCX22_RS10470 (SA59458_19830) | - | 2104593..2104793 (-) | 201 | WP_000365299.1 | hypothetical protein | - |
| OCX22_RS10475 (SA59458_19840) | - | 2104807..2106501 (-) | 1695 | WP_000133304.1 | terminase large subunit | - |
| OCX22_RS10480 (SA59458_19850) | - | 2106504..2106971 (-) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| OCX22_RS10485 (SA59458_19860) | - | 2107100..2107444 (-) | 345 | WP_000817289.1 | HNH endonuclease | - |
| OCX22_RS10490 (SA59458_19870) | - | 2107460..2107912 (-) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| OCX22_RS10495 (SA59458_19880) | - | 2108027..2108497 (-) | 471 | WP_000282755.1 | hypothetical protein | - |
| OCX22_RS10500 (SA59458_19890) | - | 2108520..2108720 (-) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| OCX22_RS10505 (SA59458_19900) | - | 2108720..2109370 (-) | 651 | WP_001005262.1 | hypothetical protein | - |
| OCX22_RS10510 | - | 2109529..2109594 (-) | 66 | Protein_2037 | transcriptional regulator | - |
| OCX22_RS10515 (SA59458_19920) | - | 2109595..2109735 (-) | 141 | Protein_2038 | SA1788 family PVL leukocidin-associated protein | - |
| OCX22_RS10520 | - | 2109759..2109905 (-) | 147 | WP_315973532.1 | hypothetical protein | - |
| OCX22_RS10525 (SA59458_19930) | - | 2109854..2110577 (-) | 724 | Protein_2040 | DnaD domain protein | - |
| OCX22_RS10530 (SA59458_19940) | ssbA | 2110607..2111077 (-) | 471 | WP_000934765.1 | single-stranded DNA-binding protein | Machinery gene |
| OCX22_RS10535 (SA59458_19950) | - | 2111078..2111695 (-) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| OCX22_RS10540 (SA59458_19960) | - | 2111776..2112696 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| OCX22_RS10545 (SA59458_19970) | - | 2112698..2114653 (-) | 1956 | WP_064138715.1 | AAA family ATPase | - |
| OCX22_RS10550 (SA59458_19980) | - | 2114650..2114913 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| OCX22_RS10555 (SA59458_19990) | - | 2114922..2115182 (-) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| OCX22_RS10560 (SA59458_20000) | - | 2115275..2115436 (-) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| OCX22_RS10565 (SA59458_20010) | - | 2115433..2115753 (-) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| OCX22_RS10570 (SA59458_20020) | - | 2115812..2116444 (+) | 633 | WP_000275058.1 | hypothetical protein | - |
| OCX22_RS10575 (SA59458_20030) | - | 2116459..2116599 (-) | 141 | WP_000939496.1 | hypothetical protein | - |
| OCX22_RS10580 (SA59458_20040) | - | 2116630..2116827 (-) | 198 | WP_001148861.1 | hypothetical protein | - |
| OCX22_RS10585 (SA59458_20050) | - | 2116843..2117592 (-) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| OCX22_RS10590 (SA59458_20060) | - | 2117649..2118188 (+) | 540 | WP_000351243.1 | hypothetical protein | - |
| OCX22_RS10595 (SA59458_20070) | - | 2118212..2118472 (-) | 261 | WP_000435341.1 | transcriptional regulator | - |
| OCX22_RS10600 (SA59458_20080) | - | 2118490..2118714 (-) | 225 | WP_000338186.1 | DUF739 family protein | - |
| OCX22_RS10605 (SA59458_20090) | - | 2118873..2119643 (+) | 771 | WP_001208482.1 | S24 family peptidase | - |
| OCX22_RS10610 (SA59458_20100) | seq | 2119839..2120567 (+) | 729 | WP_001033320.1 | staphylococcal enterotoxin type Q | - |
| OCX22_RS10615 (SA59458_20110) | sek | 2120591..2121319 (+) | 729 | WP_000733771.1 | staphylococcal enterotoxin type K | - |
| OCX22_RS10620 (SA59458_20120) | - | 2121403..2122440 (+) | 1038 | WP_000857182.1 | site-specific integrase | - |
| OCX22_RS10625 (SA59458_20130) | sph | 2122497..2123321 (+) | 825 | Protein_2060 | sphingomyelin phosphodiesterase | - |
| OCX22_RS10630 (SA59458_20140) | lukG | 2123559..2124575 (-) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| OCX22_RS10635 (SA59458_20150) | lukH | 2124597..2125649 (-) | 1053 | WP_000791417.1 | bi-component leukocidin LukGH subunit H | - |
| OCX22_RS10640 (SA59458_20160) | - | 2126085..2127308 (+) | 1224 | WP_000206623.1 | ArgE/DapE family deacylase | - |
| OCX22_RS10645 (SA59458_20170) | - | 2127680..2128525 (-) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| OCX22_RS10650 | - | 2128587..2129496 (-) | 910 | Protein_2065 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| OCX22_RS10655 | - | 2129631..2130943 (+) | 1313 | Protein_2066 | TrkH family potassium uptake protein | - |
| OCX22_RS10660 (SA59458_20220) | - | 2131788..2132231 (-) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| OCX22_RS10665 (SA59458_20230) | - | 2132337..2132774 (-) | 438 | WP_072419900.1 | hypothetical protein | - |
| OCX22_RS10670 (SA59458_20240) | - | 2133091..2133681 (-) | 591 | WP_001293059.1 | terminase small subunit | - |
| OCX22_RS10675 (SA59458_20250) | - | 2133678..2133890 (-) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| OCX22_RS10680 | - | 2133951..2134497 (+) | 547 | Protein_2071 | site-specific integrase | - |
| OCX22_RS10685 (SA59458_20270) | groL | 2134592..2136208 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| OCX22_RS10690 (SA59458_20280) | groES | 2136284..2136568 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.54 Da Isoelectric Point: 4.9627
>NTDB_id=87750 OCX22_RS10530 WP_000934765.1 2110607..2111077(-) (ssbA) [Staphylococcus aureus strain 59458]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=87750 OCX22_RS10530 WP_000934765.1 2110607..2111077(-) (ssbA) [Staphylococcus aureus strain 59458]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |