Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RHM56_RS01665 Genome accession   NZ_CP133778
Coordinates   352440..353657 (-) Length   405 a.a.
NCBI ID   WP_322237917.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347440..358657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS01640 (RHM56_01640) - 348303..348932 (-) 630 WP_322237907.1 DUF1780 domain-containing protein -
  RHM56_RS01645 (RHM56_01645) - 349200..350483 (-) 1284 WP_322237909.1 OprD family porin -
  RHM56_RS01650 (RHM56_01650) yacG 350752..350955 (-) 204 WP_322237911.1 DNA gyrase inhibitor YacG -
  RHM56_RS01655 (RHM56_01655) coaE 350952..351575 (-) 624 WP_322237913.1 dephospho-CoA kinase -
  RHM56_RS01660 (RHM56_01660) - 351577..352437 (-) 861 WP_322237915.1 A24 family peptidase -
  RHM56_RS01665 (RHM56_01665) pilC 352440..353657 (-) 1218 WP_322237917.1 type II secretion system F family protein Machinery gene
  RHM56_RS01670 (RHM56_01670) - 353880..354284 (+) 405 WP_322237919.1 pilin -
  RHM56_RS01675 (RHM56_01675) - 354458..355954 (+) 1497 WP_322237921.1 AlkA N-terminal domain-containing protein -
  RHM56_RS01680 (RHM56_01680) - 355951..356448 (+) 498 WP_322237923.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  RHM56_RS01685 (RHM56_01685) nadC 356542..357390 (-) 849 WP_322237925.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44234.97 Da        Isoelectric Point: 10.0522

>NTDB_id=876663 RHM56_RS01665 WP_322237917.1 352440..353657(-) (pilC) [Pseudomonas sp. CCC3.1]
MATRTVKTSVYRWEGTDFNGVHVRGELTADSHAMIRVQLRRQGITAGKIQRHSGREPRTGKPIKALQISLFTRQLATLIK
AGIPLLQALEVIAKGFEHPAMRQLVTELKQDISAGTNLASALRKKPAHFDALFCNLIEAGEQAGALDVLLQRVATYTEKT
EAMKKKIKKAMTYPVAVLLVALLVSAILLIEVVPQFQGIFSSFDAQLPAFTLSVIALSEWLTQYGLWLFGGVCLMLAGFR
HRYKHSQPLRNRFDRWLLKLPLIGLLLHLSAIARFARTLSTTIAAGVPLLDALNAVAGATGNNVYSEAVQRLRQHVATGS
QIHVAMSAAGVFPGMAIQMTAIGEESGTLDDMLNHVATYYENEVDSLVDNLTTLMEPAIMAVLGVMVGGLVIAMYLPIFK
LGQVI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=876663 RHM56_RS01665 WP_322237917.1 352440..353657(-) (pilC) [Pseudomonas sp. CCC3.1]
ATGGCAACACGGACCGTTAAAACCAGTGTTTATCGCTGGGAAGGCACTGACTTCAACGGCGTTCATGTCAGGGGCGAACT
CACCGCCGACAGCCACGCCATGATCCGGGTCCAACTGCGCCGCCAAGGTATTACCGCAGGTAAAATCCAGCGCCATAGTG
GCCGCGAGCCACGCACGGGAAAACCGATCAAAGCGCTGCAAATCTCACTGTTTACTCGCCAACTGGCCACCCTGATCAAA
GCCGGAATCCCATTGCTACAGGCCCTTGAGGTGATAGCCAAAGGCTTCGAGCATCCCGCGATGCGCCAATTGGTGACCGA
ACTTAAACAAGACATCAGTGCTGGCACCAACCTGGCATCGGCGCTGCGTAAAAAACCGGCTCACTTCGACGCGCTGTTTT
GCAACCTCATCGAAGCGGGCGAACAGGCCGGGGCTCTGGATGTGTTGCTACAGCGAGTGGCGACCTACACAGAAAAAACC
GAAGCGATGAAAAAGAAAATCAAAAAGGCCATGACCTACCCTGTCGCCGTATTGCTGGTGGCTCTGCTGGTCAGCGCCAT
TTTGCTGATTGAAGTGGTGCCGCAGTTCCAGGGCATTTTCAGTTCATTTGACGCCCAACTGCCAGCGTTCACCTTAAGCG
TGATCGCGTTGTCCGAGTGGCTGACGCAATACGGCTTGTGGCTGTTCGGTGGTGTTTGCCTGATGCTTGCCGGCTTTCGA
CATCGCTATAAACACTCTCAACCCCTGCGTAACCGCTTTGATCGCTGGCTGCTCAAGCTGCCGCTAATCGGCCTGCTGCT
GCACTTGTCAGCCATTGCCCGCTTTGCCCGCACGTTATCAACCACGATTGCCGCCGGGGTTCCGTTACTCGACGCCTTGA
ATGCTGTAGCCGGTGCCACGGGCAATAACGTGTACAGCGAGGCTGTGCAGCGGCTCAGGCAACACGTGGCAACCGGTAGC
CAGATCCATGTCGCCATGAGCGCTGCCGGGGTGTTTCCGGGCATGGCGATTCAGATGACAGCTATTGGCGAAGAATCCGG
CACATTGGACGACATGCTTAATCACGTTGCCACCTATTATGAGAACGAGGTCGACAGCCTGGTCGATAACCTGACAACGT
TAATGGAACCGGCAATCATGGCGGTTTTGGGCGTCATGGTGGGTGGGCTGGTGATTGCCATGTATTTACCGATATTCAAA
CTGGGCCAAGTGATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.296

100

0.563
  pilC Acinetobacter baylyi ADP1

51.97

100

0.521
  pilC Acinetobacter baumannii D1279779

52.645

98.025

0.516
  pilC Legionella pneumophila strain ERS1305867

49.749

98.272

0.489
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilG Neisseria gonorrhoeae MS11

40.355

97.284

0.393
  pilG Neisseria meningitidis 44/76-A

40.102

97.284

0.39
  pilC Vibrio campbellii strain DS40M4

39.798

98.025

0.39