Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RGU80_RS01520 Genome accession   NZ_CP133706
Coordinates   328165..328626 (+) Length   153 a.a.
NCBI ID   WP_000993718.1    Uniprot ID   A0A9P2XM63
Organism   Acinetobacter baumannii strain CRAb2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 328758..329768 328165..328626 flank 132


Gene organization within MGE regions


Location: 328165..329768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU80_RS01520 (RGU80_01525) pilA 328165..328626 (+) 462 WP_000993718.1 pilin Machinery gene
  RGU80_RS01525 (RGU80_01530) - 328800..329768 (+) 969 WP_014538385.1 IS30 family transposase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15449.52 Da        Isoelectric Point: 4.9218

>NTDB_id=875953 RGU80_RS01520 WP_000993718.1 328165..328626(+) (pilA) [Acinetobacter baumannii strain CRAb2]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYVARSQATAGYSEISNMRTGYDTELNDGTAITSLSQVGFTATSSGACS
AIGVTNFGNDGAATNAITCTLKGNPKIAGKIISLSRSATGAWTCSTDIATTDEFLPKGCTGGGTPAVGAITTL

Nucleotide


Download         Length: 462 bp        

>NTDB_id=875953 RGU80_RS01520 WP_000993718.1 328165..328626(+) (pilA) [Acinetobacter baumannii strain CRAb2]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAATTATGTAGCTCGTTCTCAGGCTACAGCTGGATATTCTGAAATTAGTAACATGCGTACGGGTTACG
ACACCGAATTAAATGATGGTACAGCGATTACCTCTCTTTCTCAAGTTGGCTTTACTGCGACTTCATCTGGCGCATGTTCA
GCCATAGGTGTTACAAATTTTGGTAACGATGGCGCAGCTACTAACGCTATTACGTGTACTTTAAAAGGAAATCCAAAAAT
CGCTGGAAAGATTATTTCACTTTCACGTTCAGCGACCGGTGCATGGACTTGTAGTACAGATATTGCCACTACTGACGAAT
TCTTACCAAAAGGATGTACGGGTGGTGGAACACCAGCCGTTGGTGCAATTACTACTTTGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

64.286

100

0.647
  pilA Pseudomonas aeruginosa PAK

43.709

98.693

0.431
  pilA Vibrio cholerae strain A1552

42.581

100

0.431
  pilA Vibrio cholerae C6706

42.581

100

0.431
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

42.581

100

0.431
  comP Acinetobacter baylyi ADP1

39.744

100

0.405
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.357

93.464

0.405