Detailed information NTG0875941

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: RFN66_RS21040
• Genome accession: NZ_CP133705
• Coordinates: 4050449..4051021 (-)
• Length: 190 a.a.
• NCBI ID: WP_025810658.1
• Uniprot ID: A0A6I7TPT5
• Organism: Bacillus paralicheniformis strain CP47
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4045449..4056021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN66_RS21015 (RFN66_21015)	-	4045786..4046193 (-)	408	WP_128822175.1	CBS domain-containing protein	-
RFN66_RS21020 (RFN66_21020)	-	4046256..4047212 (-)	957	WP_023857119.1	magnesium transporter CorA family protein	-
RFN66_RS21025 (RFN66_21025)	-	4047374..4048672 (+)	1299	WP_026580220.1	hemolysin family protein	-
RFN66_RS21030 (RFN66_21030)	-	4048821..4050032 (+)	1212	WP_026580221.1	ammonium transporter	-
RFN66_RS21035 (RFN66_21035)	-	4050051..4050401 (+)	351	WP_003185936.1	P-II family nitrogen regulator	-
RFN66_RS21040 (RFN66_21040)	clpP	4050449..4051021 (-)	573	WP_025810658.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RFN66_RS21045 (RFN66_21045)	-	4051035..4051640 (-)	606	WP_128822176.1	RNA polymerase sigma factor	-
RFN66_RS21050 (RFN66_21050)	-	4051776..4052651 (-)	876	WP_023857113.1	M23 family metallopeptidase	-
RFN66_RS21055 (RFN66_21055)	-	4052845..4053342 (+)	498	WP_023857112.1	GNAT family N-acetyltransferase	-
RFN66_RS21060 (RFN66_21060)	-	4053393..4053836 (-)	444	WP_025810657.1	YwnF family protein	-
RFN66_RS21065 (RFN66_21065)	cls	4054084..4055532 (+)	1449	WP_025810656.1	cardiolipin synthase	-

Sequence

Protein

• Length: 190 a.a.
• Molecular weight: 21088.23 Da
• Isoelectric Point: 5.3555

>NTDB_id=875941 RFN66_RS21040 WP_025810658.1 4050449..4051021(-) (clpP) [Bacillus paralicheniformis strain CP47]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVKPDVRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIEHFFHERTGQ
PIERLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide

• Length: 573 bp

>NTDB_id=875941 RFN66_RS21040 WP_025810658.1 4050449..4051021(-) (clpP) [Bacillus paralicheniformis strain CP47]
ATGAACACCATACCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGTTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAGTTGCTGTTTTTGTCAGCCG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCGATTTTAGATACG
ATGGACTATGTGAAGCCGGATGTCCGCACGATCTGTGTCGGAATGGCAGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG
AACAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCACTTCTTTCACGAACGAACGGGCCAG
CCCATTGAAAGACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTGATTGA
CGCCGTTTTATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-190)

3D structure

• AlphaFold DB: A0A6I7TPT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	65.263	100	0.653
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	61.497	98.421	0.605
clpP	Streptococcus thermophilus LMG 18311	55.556	99.474	0.553
clpP	Streptococcus thermophilus LMD-9	55.556	99.474	0.553
clpP	Streptococcus pyogenes MGAS315	55.026	99.474	0.547
clpP	Streptococcus pyogenes JRS4	55.026	99.474	0.547
clpP	Streptococcus pneumoniae D39	54.497	99.474	0.542
clpP	Streptococcus mutans UA159	54.497	99.474	0.542
clpP	Streptococcus pneumoniae Rx1	54.497	99.474	0.542
clpP	Streptococcus pneumoniae R6	54.497	99.474	0.542
clpP	Streptococcus pneumoniae TIGR4	54.497	99.474	0.542
clpP	Lactococcus lactis subsp. cremoris KW2	52.91	99.474	0.526
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	99.474	0.516