Detailed information NTG0875935

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: RFN66_RS20100
• Genome accession: NZ_CP133705
• Coordinates: 3866543..3867139 (+)
• Length: 198 a.a.
• NCBI ID: WP_003185550.1
• Uniprot ID: A0A1J6GJE1
• Organism: Bacillus paralicheniformis strain CP47
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3861543..3872139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN66_RS20075 (RFN66_20075)	-	3862503..3863948 (+)	1446	WP_023856345.1	glycoside hydrolase family 68 protein	-
RFN66_RS20080 (RFN66_20080)	-	3864028..3865575 (+)	1548	WP_039073036.1	glycoside hydrolase family 32 protein	-
RFN66_RS20085 (RFN66_20085)	-	3865640..3865792 (-)	153	WP_164468296.1	hypothetical protein	-
RFN66_RS20095 (RFN66_20095)	-	3866140..3866259 (-)	120	WP_075212739.1	NINE protein	-
RFN66_RS20100 (RFN66_20100)	clpP	3866543..3867139 (+)	597	WP_003185550.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
RFN66_RS20105 (RFN66_20105)	-	3867214..3867789 (-)	576	WP_026580147.1	TIGR00730 family Rossman fold protein	-
RFN66_RS20110 (RFN66_20110)	-	3867900..3868235 (+)	336	WP_026580148.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
RFN66_RS20115 (RFN66_20115)	-	3868222..3869199 (+)	978	WP_309539571.1	HD domain-containing protein	-
RFN66_RS20120 (RFN66_20120)	-	3869247..3870866 (-)	1620	WP_309539572.1	solute carrier family 23 protein	-
RFN66_RS20125 (RFN66_20125)	-	3870867..3871466 (-)	600	WP_020453050.1	carbonic anhydrase	-

Sequence

Protein

• Length: 198 a.a.
• Molecular weight: 21803.99 Da
• Isoelectric Point: 4.7982

>NTDB_id=875935 RFN66_RS20100 WP_003185550.1 3866543..3867139(+) (clpP) [Bacillus paralicheniformis strain CP47]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide

• Length: 597 bp

>NTDB_id=875935 RFN66_RS20100 WP_003185550.1 3866543..3867139(+) (clpP) [Bacillus paralicheniformis strain CP47]
ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA
CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG
AAGATCCAGAAAAAGATATCAGCATCTATATTAACAGCCCTGGCGGCTCTATCACAGCCGGCATGGCGATTTATGACACC
ATGCAGTTCATTAAACCTCAAGTCTCTACGATTTGTACGGGAATGGCGGCATCTATGGGTGCGTTCCTTCTCGCAGCCGG
CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGTGAAGTCATGATCCACCAGCCGCTTGGCGGAGCGCAAGGTCAGGCAA
CAGAAATCGAAATTGCCGCGAAGCGCATTCTTTCATTGCGTGACAAACTGAACAAAATTCTTGCAGAGCGCACTGGACAA
CCGCTTGAAGTGATCGAGCGCGATACAGACCGTGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCCTGATTGA
TAAAGTGCTCACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

3D structure

• AlphaFold DB: A0A1J6GJE1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.386	99.495	0.919
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.229	96.97	0.662
clpP	Streptococcus thermophilus LMG 18311	58.031	97.475	0.566
clpP	Streptococcus thermophilus LMD-9	58.031	97.475	0.566
clpP	Lactococcus lactis subsp. cremoris KW2	56.995	97.475	0.556
clpP	Streptococcus pneumoniae Rx1	56.995	97.475	0.556
clpP	Streptococcus pneumoniae D39	56.995	97.475	0.556
clpP	Streptococcus pneumoniae R6	56.995	97.475	0.556
clpP	Streptococcus pneumoniae TIGR4	56.995	97.475	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.922	97.475	0.535