Detailed information NTG0875013

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RDV79_RS12470
• Genome accession: NZ_CP133573
• Coordinates: 2750816..2751688 (+)
• Length: 290 a.a.
• NCBI ID: WP_201879868.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain 202108B1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2745816..2756688

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV79_RS12450 (RDV79_12450)	nadC	2746122..2746979 (+)	858	WP_043171615.1	carboxylating nicotinate-nucleotide diphosphorylase	-
RDV79_RS12455 (RDV79_12455)	tapA	2747301..2747723 (+)	423	WP_043171616.1	type IVa pilus major pilin TapA	-
RDV79_RS12460 (RDV79_12460)	pilB	2747730..2749436 (+)	1707	WP_042049838.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
RDV79_RS12465 (RDV79_12465)	pilC	2749552..2750793 (+)	1242	WP_201879871.1	type II secretion system F family protein	Machinery gene
RDV79_RS12470 (RDV79_12470)	pilD	2750816..2751688 (+)	873	WP_201879868.1	A24 family peptidase	Machinery gene
RDV79_RS12475 (RDV79_12475)	coaE	2751708..2752322 (+)	615	WP_201879854.1	dephospho-CoA kinase	-
RDV79_RS12480 (RDV79_12480)	zapD	2752360..2753082 (+)	723	WP_026141001.1	cell division protein ZapD	-
RDV79_RS12485 (RDV79_12485)	yacG	2753092..2753286 (+)	195	WP_201879851.1	DNA gyrase inhibitor YacG	-
RDV79_RS12490 (RDV79_12490)	mutT	2753347..2753760 (-)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
RDV79_RS12495 (RDV79_12495)	-	2753769..2754947 (-)	1179	WP_201883625.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32576.95 Da
• Isoelectric Point: 6.7410

>NTDB_id=875013 RDV79_RS12470 WP_201879868.1 2750816..2751688(+) (pilD) [Aeromonas dhakensis strain 202108B1]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISPRYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=875013 RDV79_RS12470 WP_201879868.1 2750816..2751688(+) (pilD) [Aeromonas dhakensis strain 202108B1]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAAGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GCCCCGTTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGTTACTGCTCTCTTCCCTG
GTCGGCGCCATCATAGGGATCAGTCTCATCCTGCTGCGCAACCACCATCAGAACAAACCCATCCCCTTCGGCCCCTACCT
GGCGATCGCCGGCTGGATCGCGTTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.538	98.621	0.607
pilD	Vibrio campbellii strain DS40M4	56.794	98.966	0.562
pilD	Acinetobacter baumannii D1279779	54.577	97.931	0.534
pilD	Acinetobacter nosocomialis M2	54.577	97.931	0.534
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462