Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | Q0W94_RS08090 | Genome accession | NZ_AP024678 |
| Coordinates | 1640968..1641333 (+) | Length | 121 a.a. |
| NCBI ID | WP_297757603.1 | Uniprot ID | A0A915Y2N5 |
| Organism | MAG: Thermosynechococcus sp. isolate KatS3mg067 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1635968..1646333
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q0W94_RS08070 (KatS3mg067_1583) | - | 1636754..1637209 (+) | 456 | WP_297757593.1 | TIGR04376 family protein | - |
| Q0W94_RS08075 (KatS3mg067_1584) | aroA | 1637343..1638665 (+) | 1323 | WP_297757595.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| Q0W94_RS08080 (KatS3mg067_1585) | - | 1638985..1639620 (+) | 636 | WP_297757598.1 | MerR family transcriptional regulator | - |
| Q0W94_RS08085 (KatS3mg067_1586) | - | 1639691..1640881 (+) | 1191 | WP_297757600.1 | response regulator | - |
| Q0W94_RS08090 (KatS3mg067_1587) | pilH | 1640968..1641333 (+) | 366 | WP_297757603.1 | response regulator transcription factor | Machinery gene |
| Q0W94_RS08095 (KatS3mg067_1588) | - | 1641339..1641869 (+) | 531 | WP_297757608.1 | chemotaxis protein CheW | - |
| Q0W94_RS08100 (KatS3mg067_1589) | - | 1642068..1645259 (+) | 3192 | WP_297757610.1 | methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13522.64 Da Isoelectric Point: 4.5641
>NTDB_id=87492 Q0W94_RS08090 WP_297757603.1 1640968..1641333(+) (pilH) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
MTKVLVVEDSPPQREMISELLAKTGFDVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNGYEVCRQIKSDPRTQAIPVVM
CSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLRG
MTKVLVVEDSPPQREMISELLAKTGFDVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNGYEVCRQIKSDPRTQAIPVVM
CSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLRG
Nucleotide
Download Length: 366 bp
>NTDB_id=87492 Q0W94_RS08090 WP_297757603.1 1640968..1641333(+) (pilH) [MAG: Thermosynechococcus sp. isolate KatS3mg067]
ATGACCAAAGTCTTAGTTGTCGAAGATAGTCCACCCCAGCGGGAAATGATTAGCGAATTGCTAGCAAAAACAGGCTTTGA
CGTGACCGTTGCCACCGATGGTGTGGAGGCAATGGAGCAATTGCAGCAGAGCACCCCAGATGTCGTTGTCCTCGATATTG
TCATGCCCCGGATGAATGGCTATGAAGTCTGCCGCCAAATTAAGTCCGACCCCCGCACCCAAGCAATTCCCGTGGTTATG
TGTAGCTCCAAAGGTGAGGAGTTTGATCGCTATTGGGGCATGAAACAGGGGGCCGATGCGTACATTACGAAGCCCTTTGA
TCCCAAAGAACTTGTTGGCACGATCAAGCAACTCTTGCGAGGCTAG
ATGACCAAAGTCTTAGTTGTCGAAGATAGTCCACCCCAGCGGGAAATGATTAGCGAATTGCTAGCAAAAACAGGCTTTGA
CGTGACCGTTGCCACCGATGGTGTGGAGGCAATGGAGCAATTGCAGCAGAGCACCCCAGATGTCGTTGTCCTCGATATTG
TCATGCCCCGGATGAATGGCTATGAAGTCTGCCGCCAAATTAAGTCCGACCCCCGCACCCAAGCAATTCCCGTGGTTATG
TGTAGCTCCAAAGGTGAGGAGTTTGATCGCTATTGGGGCATGAAACAGGGGGCCGATGCGTACATTACGAAGCCCTTTGA
TCCCAAAGAACTTGTTGGCACGATCAAGCAACTCTTGCGAGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
73.554 |
100 |
0.736 |
| pilG | Acinetobacter baumannii strain A118 |
42.609 |
95.041 |
0.405 |
| micA | Streptococcus pneumoniae Cp1015 |
40 |
99.174 |
0.397 |
| scnR | Streptococcus mutans UA159 |
39.496 |
98.347 |
0.388 |
| pilL-C | Synechocystis sp. PCC 6803 |
39.496 |
98.347 |
0.388 |
| chpA | Acinetobacter baumannii strain A118 |
39.655 |
95.868 |
0.38 |
| vicR | Streptococcus mutans UA159 |
38.333 |
99.174 |
0.38 |