Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RE438_RS26155 Genome accession   NZ_CP133557
Coordinates   5005133..5005714 (+) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus wiedmannii strain EPS29     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5000133..5010714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS26110 (RE438_26085) - 5000370..5000666 (-) 297 WP_048563461.1 hypothetical protein -
  RE438_RS26120 (RE438_26095) - 5001128..5001334 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  RE438_RS26125 (RE438_26100) - 5001428..5001913 (+) 486 WP_048563460.1 YhcN/YlaJ family sporulation lipoprotein -
  RE438_RS26130 (RE438_26105) spoVAC 5001943..5002419 (+) 477 WP_048563459.1 stage V sporulation protein AC -
  RE438_RS26135 (RE438_26110) spoVAD 5002420..5003436 (+) 1017 WP_048563458.1 stage V sporulation protein AD -
  RE438_RS26140 (RE438_26115) spoVAE 5003433..5003783 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  RE438_RS26145 (RE438_26120) - 5003795..5004001 (+) 207 WP_000215917.1 DUF1657 domain-containing protein -
  RE438_RS26150 (RE438_26125) - 5004022..5004891 (+) 870 WP_048563457.1 DUF421 domain-containing protein -
  RE438_RS26155 (RE438_26130) clpP 5005133..5005714 (+) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RE438_RS26160 (RE438_26135) - 5006085..5006333 (-) 249 WP_000250305.1 HPr family phosphocarrier protein -
  RE438_RS26165 (RE438_26140) whiA 5006357..5007307 (-) 951 WP_000006568.1 DNA-binding protein WhiA -
  RE438_RS26170 (RE438_26145) yvcK 5007397..5008350 (-) 954 WP_000712179.1 YvcK family protein -
  RE438_RS26175 (RE438_26150) rapZ 5008354..5009235 (-) 882 WP_000138461.1 RNase adapter RapZ -
  RE438_RS26180 (RE438_26155) - 5009256..5009714 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=874866 RE438_RS26155 WP_001049163.1 5005133..5005714(+) (clpP) [Bacillus wiedmannii strain EPS29]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=874866 RE438_RS26155 WP_001049163.1 5005133..5005714(+) (clpP) [Bacillus wiedmannii strain EPS29]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAATAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAATTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCTGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554