Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RE438_RS00020 Genome accession   NZ_CP133557
Coordinates   3012..4139 (+) Length   375 a.a.
NCBI ID   WP_048560502.1    Uniprot ID   A0A0J7DDZ1
Organism   Bacillus wiedmannii strain EPS29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE438_RS00005 (RE438_00005) dnaA 1..1341 (+) 1341 WP_000428027.1 chromosomal replication initiator protein DnaA -
  RE438_RS00010 (RE438_00010) dnaN 1520..2659 (+) 1140 WP_001212889.1 DNA polymerase III subunit beta -
  RE438_RS00015 (RE438_00015) yaaA 2787..2999 (+) 213 WP_000821366.1 S4 domain-containing protein YaaA -
  RE438_RS00020 (RE438_00020) recF 3012..4139 (+) 1128 WP_048560502.1 DNA replication/repair protein RecF Machinery gene
  RE438_RS00025 (RE438_00025) gyrB 4178..6100 (+) 1923 WP_000435974.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RE438_RS00030 (RE438_00030) gyrA 6189..8660 (+) 2472 WP_048560503.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43405.80 Da        Isoelectric Point: 6.7809

>NTDB_id=874823 RE438_RS00020 WP_048560502.1 3012..4139(+) (recF) [Bacillus wiedmannii strain EPS29]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQVNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=874823 RE438_RS00020 WP_048560502.1 3012..4139(+) (recF) [Bacillus wiedmannii strain EPS29]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
GATTATCGGTGAAAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTACGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCATGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGTCAAATAGCTCCAGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGCTGAAAAAGATGCAAGTGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGGTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAATTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J7DDZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653