Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RDV59_RS08530 Genome accession   NZ_CP133476
Coordinates   1840899..1842869 (-) Length   656 a.a.
NCBI ID   WP_038676513.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835899..1847869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08510 (RDV59_08510) amiF 1836402..1837331 (-) 930 WP_038676505.1 ATP-binding cassette domain-containing protein Regulator
  RDV59_RS08515 (RDV59_08515) amiE 1837324..1838409 (-) 1086 WP_038676507.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS08520 (RDV59_08520) amiD 1838419..1839345 (-) 927 WP_038676509.1 oligopeptide ABC transporter permease OppC Regulator
  RDV59_RS08525 (RDV59_08525) amiC 1839345..1840838 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  RDV59_RS08530 (RDV59_08530) amiA 1840899..1842869 (-) 1971 WP_038676513.1 peptide ABC transporter substrate-binding protein Regulator
  RDV59_RS08535 (RDV59_08535) amiA 1843051..1845021 (-) 1971 WP_038676515.1 peptide ABC transporter substrate-binding protein Regulator
  RDV59_RS08540 (RDV59_08540) pta 1845258..1846241 (-) 984 WP_038676516.1 phosphate acetyltransferase -
  RDV59_RS08545 (RDV59_08545) - 1846257..1847153 (-) 897 WP_038676518.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72949.35 Da        Isoelectric Point: 5.2896

>NTDB_id=874684 RDV59_RS08530 WP_038676513.1 1840899..1842869(-) (amiA) [Streptococcus salivarius strain LMG 11489]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSRNTYNYIYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNILVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNL
KDSQDGIFNADKAKAEFNKAKEALQGEGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=874684 RDV59_RS08530 WP_038676513.1 1840899..1842869(-) (amiA) [Streptococcus salivarius strain LMG 11489]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGCGTGTCGCTTCTTAGTGTTGGGGTTTTAGTGGCTTGTTCGTCAAAATC
AAACACTTCAAGAAATACTTATAACTATATTTATACTGCCGATCCTGAAACATTGGACTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTTAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTAGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTACGATGCTTCTGACCAAGAATCACTCGTTCGTAATTTCACTGATGG
TGCTTATAGTCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCTGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAATCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAAGATTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCCCTTGCTGTTCGTAACATTCTTGTAAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGGCTTCATATGGTGATGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTATCTTCAACGCTGATAAAGCGAAGGCTGAATTTAACAAAGCTAAGGAAGCTCTTCAAGGAGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCAGCTAAACCAACGGTTGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTTGGTAAAGAAAATGTCGTGGTAGATGTTCATCAAATGTCTCAAGATGATCTTCTAAAT
AGCACATTGTATGCAGCTAATGCAGCGGCAGAAGACTGGGATATCAATATCTCAGTAGCTTGGGCTCCTGACTATGAAGA
TCCATCAACATTCCTCGATATCTTCAAAACAACAGCTAGTGAGAACACTAAAACTTACATGGGATTTGACGACCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAGGAAACAAGCGACCTCAAT
GTACGTTATGAACGTTATGCTGAGGCACAAGCTTGGTTGGAAGACAGCTCGCTCTTTATGCCACTTATGGTCAATAAGGG
GGCTGCGCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGCGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

74.695

100

0.747
  amiA3 Streptococcus thermophilus LMG 18311

74.429

100

0.745
  amiA3 Streptococcus thermophilus LMD-9

74.429

100

0.745