Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RDV59_RS08520 Genome accession   NZ_CP133476
Coordinates   1838419..1839345 (-) Length   308 a.a.
NCBI ID   WP_038676509.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833419..1844345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08490 (RDV59_08490) - 1833498..1834292 (-) 795 WP_038676501.1 HAD family hydrolase -
  RDV59_RS08495 (RDV59_08495) - 1834474..1834851 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  RDV59_RS08500 (RDV59_08500) - 1834856..1835554 (+) 699 WP_038676503.1 ABC transporter ATP-binding protein -
  RDV59_RS08505 (RDV59_08505) - 1835566..1836351 (+) 786 WP_021143813.1 hypothetical protein -
  RDV59_RS08510 (RDV59_08510) amiF 1836402..1837331 (-) 930 WP_038676505.1 ATP-binding cassette domain-containing protein Regulator
  RDV59_RS08515 (RDV59_08515) amiE 1837324..1838409 (-) 1086 WP_038676507.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS08520 (RDV59_08520) amiD 1838419..1839345 (-) 927 WP_038676509.1 oligopeptide ABC transporter permease OppC Regulator
  RDV59_RS08525 (RDV59_08525) amiC 1839345..1840838 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  RDV59_RS08530 (RDV59_08530) amiA 1840899..1842869 (-) 1971 WP_038676513.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34619.74 Da        Isoelectric Point: 9.7054

>NTDB_id=874682 RDV59_RS08520 WP_038676509.1 1838419..1839345(-) (amiD) [Streptococcus salivarius strain LMG 11489]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGPPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=874682 RDV59_RS08520 WP_038676509.1 1838419..1839345(-) (amiD) [Streptococcus salivarius strain LMG 11489]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAGAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGTTTTATCTACCCGATGTTTTCAAAATTTGACTTTAATGATGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTGCATCCAAACGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCCCTCTTCGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCTCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTTACAGGGTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTATAACTTGGCTTCTCGTACACTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAACATCATGCCACAACTAGTGTCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTAGGGCCTCCTGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.701

100

0.987
  amiD Streptococcus thermophilus LMG 18311

96.429

100

0.964
  amiD Streptococcus thermophilus LMD-9

96.429

100

0.964