Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RDV59_RS08510 Genome accession   NZ_CP133476
Coordinates   1836402..1837331 (-) Length   309 a.a.
NCBI ID   WP_038676505.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1831402..1842331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08485 (RDV59_08485) - 1832687..1833505 (-) 819 WP_038676498.1 Cof-type HAD-IIB family hydrolase -
  RDV59_RS08490 (RDV59_08490) - 1833498..1834292 (-) 795 WP_038676501.1 HAD family hydrolase -
  RDV59_RS08495 (RDV59_08495) - 1834474..1834851 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  RDV59_RS08500 (RDV59_08500) - 1834856..1835554 (+) 699 WP_038676503.1 ABC transporter ATP-binding protein -
  RDV59_RS08505 (RDV59_08505) - 1835566..1836351 (+) 786 WP_021143813.1 hypothetical protein -
  RDV59_RS08510 (RDV59_08510) amiF 1836402..1837331 (-) 930 WP_038676505.1 ATP-binding cassette domain-containing protein Regulator
  RDV59_RS08515 (RDV59_08515) amiE 1837324..1838409 (-) 1086 WP_038676507.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS08520 (RDV59_08520) amiD 1838419..1839345 (-) 927 WP_038676509.1 oligopeptide ABC transporter permease OppC Regulator
  RDV59_RS08525 (RDV59_08525) amiC 1839345..1840838 (-) 1494 WP_038676511.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35077.13 Da        Isoelectric Point: 6.5820

>NTDB_id=874680 RDV59_RS08510 WP_038676505.1 1836402..1837331(-) (amiF) [Streptococcus salivarius strain LMG 11489]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDDKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERQKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=874680 RDV59_RS08510 WP_038676505.1 1836402..1837331(-) (amiF) [Streptococcus salivarius strain LMG 11489]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTTTAAATGATACAAGTAATGGTGAGATTATTTTTGACGATAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCGGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTCAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTTGAATTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.029

100

0.99
  amiF Streptococcus thermophilus LMG 18311

97.087

100

0.971
  amiF Streptococcus thermophilus LMD-9

96.764

100

0.968