Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RDV59_RS08525 Genome accession   NZ_CP133476
Coordinates   1839345..1840838 (-) Length   497 a.a.
NCBI ID   WP_038676511.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834345..1845838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08495 (RDV59_08495) - 1834474..1834851 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  RDV59_RS08500 (RDV59_08500) - 1834856..1835554 (+) 699 WP_038676503.1 ABC transporter ATP-binding protein -
  RDV59_RS08505 (RDV59_08505) - 1835566..1836351 (+) 786 WP_021143813.1 hypothetical protein -
  RDV59_RS08510 (RDV59_08510) amiF 1836402..1837331 (-) 930 WP_038676505.1 ATP-binding cassette domain-containing protein Regulator
  RDV59_RS08515 (RDV59_08515) amiE 1837324..1838409 (-) 1086 WP_038676507.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS08520 (RDV59_08520) amiD 1838419..1839345 (-) 927 WP_038676509.1 oligopeptide ABC transporter permease OppC Regulator
  RDV59_RS08525 (RDV59_08525) amiC 1839345..1840838 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  RDV59_RS08530 (RDV59_08530) amiA 1840899..1842869 (-) 1971 WP_038676513.1 peptide ABC transporter substrate-binding protein Regulator
  RDV59_RS08535 (RDV59_08535) amiA 1843051..1845021 (-) 1971 WP_038676515.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55859.62 Da        Isoelectric Point: 10.0104

>NTDB_id=874683 RDV59_RS08525 WP_038676511.1 1839345..1840838(-) (amiC) [Streptococcus salivarius strain LMG 11489]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=874683 RDV59_RS08525 WP_038676511.1 1839345..1840838(-) (amiC) [Streptococcus salivarius strain LMG 11489]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATTGATTACTATGATACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACA
TGGCTGGCGTTTACATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GTTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGAACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTTAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGTCAAGGACAAACACAAAGTTCTGAGGTCAACTTCCCTACTGGTAAGAAGGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCGACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAATACCCTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTACTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAACGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

99.195

100

0.992
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974