Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RDV59_RS08535 Genome accession   NZ_CP133476
Coordinates   1843051..1845021 (-) Length   656 a.a.
NCBI ID   WP_038676515.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838051..1850021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08520 (RDV59_08520) amiD 1838419..1839345 (-) 927 WP_038676509.1 oligopeptide ABC transporter permease OppC Regulator
  RDV59_RS08525 (RDV59_08525) amiC 1839345..1840838 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  RDV59_RS08530 (RDV59_08530) amiA 1840899..1842869 (-) 1971 WP_038676513.1 peptide ABC transporter substrate-binding protein Regulator
  RDV59_RS08535 (RDV59_08535) amiA 1843051..1845021 (-) 1971 WP_038676515.1 peptide ABC transporter substrate-binding protein Regulator
  RDV59_RS08540 (RDV59_08540) pta 1845258..1846241 (-) 984 WP_038676516.1 phosphate acetyltransferase -
  RDV59_RS08545 (RDV59_08545) - 1846257..1847153 (-) 897 WP_038676518.1 RluA family pseudouridine synthase -
  RDV59_RS08550 (RDV59_08550) - 1847150..1847986 (-) 837 WP_002884507.1 NAD kinase -
  RDV59_RS08555 (RDV59_08555) - 1847958..1848632 (-) 675 WP_014634828.1 GTP pyrophosphokinase family protein -
  RDV59_RS08560 (RDV59_08560) - 1848728..1849303 (+) 576 WP_038676520.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71882.59 Da        Isoelectric Point: 4.8676

>NTDB_id=874685 RDV59_RS08535 WP_038676515.1 1843051..1845021(-) (amiA) [Streptococcus salivarius strain LMG 11489]
MKKSKWLALAGVALLSVGALAACSSKSGTSGTTYGYVYNSDPESLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYSSVEKKYKDNIYYTAAGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKISSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKIHVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVN

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=874685 RDV59_RS08535 WP_038676515.1 1843051..1845021(-) (amiA) [Streptococcus salivarius strain LMG 11489]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AGGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGATCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACTAAGACAGCTGTGACAAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAGTTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGTCTGGAGCTCTTT
ACTTGGTGCAAGATTCTATTGCTGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACACTTAAAAAACCTGAGCCATACTGGAATTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCCTTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGCTCTAACTATTCTTCTGTAGAGAAGAAATATAAAGATAACATTTATT
ACACTGCAGCAGGTGCGTCTACATCAGCCATTGGTGTTAATATTGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATATCCTCTTATGGTGATGAATGGTCAGGTGTAAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAGGCTCTTCAAGGAGA
AGGGGTACAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAAGTTCTAAAATCCATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAACAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTGTCATCTGATGACATGCAAAAT
GCGACTCTTAATGCGGCAAATGCTGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTATCTTGATATCTTCAAAACAACATCAAGTGAAAATACCAAGACTTTCATGGGATATGATGATCCAAACA
ATGCAGCAGCAGCCCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGTTATGCTCAAGCTCAAGCTTGGTTGGAAGATAGCTCTCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATGCAGGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTCACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAATTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

98.321

99.848

0.982
  amiA3 Streptococcus thermophilus LMG 18311

89.939

100

0.899
  amiA3 Streptococcus thermophilus LMD-9

89.787

100

0.898