Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RDV59_RS02935 Genome accession   NZ_CP133476
Coordinates   565071..565661 (+) Length   196 a.a.
NCBI ID   WP_002883818.1    Uniprot ID   A0AB33ZFD4
Organism   Streptococcus salivarius strain LMG 11489     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 560071..570661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS02925 (RDV59_02925) - 561262..564177 (+) 2916 WP_038675329.1 glycoside hydrolase family 68 protein -
  RDV59_RS02930 (RDV59_02930) upp 564267..564896 (+) 630 WP_002883819.1 uracil phosphoribosyltransferase -
  RDV59_RS02935 (RDV59_02935) clpP 565071..565661 (+) 591 WP_002883818.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RDV59_RS02940 (RDV59_02940) - 565747..566196 (+) 450 WP_014633922.1 YlbF family regulator -
  RDV59_RS02945 (RDV59_02945) - 566189..566470 (+) 282 WP_014633923.1 DUF2129 domain-containing protein -
  RDV59_RS02950 (RDV59_02950) - 566626..567801 (+) 1176 WP_038675331.1 ABC transporter substrate-binding protein -
  RDV59_RS02955 (RDV59_02955) - 567845..568729 (+) 885 WP_002883743.1 branched-chain amino acid ABC transporter permease -
  RDV59_RS02960 (RDV59_02960) - 568733..569683 (+) 951 WP_002883720.1 branched-chain amino acid ABC transporter permease -
  RDV59_RS02965 (RDV59_02965) - 569686..570450 (+) 765 WP_002883723.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21533.57 Da        Isoelectric Point: 4.4829

>NTDB_id=874655 RDV59_RS02935 WP_002883818.1 565071..565661(+) (clpP) [Streptococcus salivarius strain LMG 11489]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ
PIEKVHVDAERDNWMSAQETLEYGFIDEIMANNQLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=874655 RDV59_RS02935 WP_002883818.1 565071..565661(+) (clpP) [Streptococcus salivarius strain LMG 11489]
ATGATTCCTGTAGTAATTGAACAAACATCACGCGGTGAGCGTTCTTATGATATTTACTCACGTTTGCTCAAGGATCGTAT
CATCATGTTAACAGGTCCTGTTGAAGATAATATGGCAAACTCAATTATCGCCCAACTCTTGTTCTTGGATGCTCAAGACA
ACACAAAAGATATCTATCTTTATGTTAATACACCAGGTGGATCAGTTTCGGCAGGTCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAGACTATCGTTATGGGGATGGCAGCATCTATGGGAACAATTATTGCTTCAAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGTACTGGTGGTGGTACGCAACAAA
CAGACATGGCTATCGCAGCTGAACATTTGCTCAAAACGCGTAATAACTTGGAGCAAATCTTGGCGGATAATTCTGGACAG
CCAATTGAAAAAGTTCATGTAGACGCTGAACGTGACAATTGGATGAGTGCCCAAGAAACGCTTGAATATGGCTTTATCGA
TGAAATCATGGCTAATAACCAATTAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus thermophilus LMG 18311

98.98

100

0.99
  clpP Streptococcus thermophilus LMD-9

98.98

100

0.99
  clpP Streptococcus pneumoniae Rx1

93.846

99.49

0.934
  clpP Streptococcus pneumoniae D39

93.846

99.49

0.934
  clpP Streptococcus pneumoniae R6

93.846

99.49

0.934
  clpP Streptococcus pneumoniae TIGR4

93.846

99.49

0.934
  clpP Streptococcus pyogenes JRS4

90.306

100

0.903
  clpP Streptococcus pyogenes MGAS315

90.306

100

0.903
  clpP Streptococcus mutans UA159

88.265

100

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.755

100

0.878
  clpP Lactococcus lactis subsp. cremoris KW2

87.245

100

0.872
  clpP Bacillus subtilis subsp. subtilis str. 168

58.163

100

0.582
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571