Detailed information NTG0874571

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: RDV58_RS02085
• Genome accession: NZ_CP133475
• Coordinates: 416926..417330 (+)
• Length: 134 a.a.
• NCBI ID: WP_002264246.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain LMG 14558
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 411926..422330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV58_RS02065 (RDV58_02065)	-	414204..414587 (+)	384	WP_002264248.1	DUF1033 family protein	-
RDV58_RS02070 (RDV58_02070)	comYA	414717..415658 (+)	942	WP_002264247.1	competence type IV pilus ATPase ComGA	Machinery gene
RDV58_RS02075 (RDV58_02075)	comYB	415594..416625 (+)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
RDV58_RS02080 (RDV58_02080)	comYC	416625..416939 (+)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
RDV58_RS02085 (RDV58_02085)	comYD	416926..417330 (+)	405	WP_002264246.1	competence type IV pilus minor pilin ComGD	Machinery gene
RDV58_RS02090 (RDV58_02090)	comYE	417302..417595 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
RDV58_RS02095 (RDV58_02095)	comYF	417582..418016 (+)	435	WP_002264245.1	competence type IV pilus minor pilin ComGF	Machinery gene
RDV58_RS02100 (RDV58_02100)	comYG	417994..418383 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
RDV58_RS02105 (RDV58_02105)	comYH	418438..419391 (+)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
RDV58_RS02110 (RDV58_02110)	-	419450..420649 (+)	1200	WP_002263443.1	acetate kinase	-
RDV58_RS02115 (RDV58_02115)	-	421202..421447 (+)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
RDV58_RS02120 (RDV58_02120)	-	421416..421856 (+)	441	WP_002263445.1	hypothetical protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15425.73 Da
• Isoelectric Point: 9.2271

>NTDB_id=874571 RDV58_RS02085 WP_002264246.1 416926..417330(+) (comYD) [Streptococcus mutans strain LMG 14558]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEEHLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=874571 RDV58_RS02085 WP_002264246.1 416926..417330(+) (comYD) [Streptococcus mutans strain LMG 14558]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCATCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	99.254	100	0.993
comYD	Streptococcus mutans UA159	99.254	100	0.993
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388