Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | RDV58_RS02105 | Genome accession | NZ_CP133475 |
| Coordinates | 418438..419391 (+) | Length | 317 a.a. |
| NCBI ID | WP_002264244.1 | Uniprot ID | A0AAX1K2T6 |
| Organism | Streptococcus mutans strain LMG 14558 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 413438..424391
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RDV58_RS02065 (RDV58_02065) | - | 414204..414587 (+) | 384 | WP_002264248.1 | DUF1033 family protein | - |
| RDV58_RS02070 (RDV58_02070) | comYA | 414717..415658 (+) | 942 | WP_002264247.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RDV58_RS02075 (RDV58_02075) | comYB | 415594..416625 (+) | 1032 | WP_255262721.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RDV58_RS02080 (RDV58_02080) | comYC | 416625..416939 (+) | 315 | WP_002263437.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RDV58_RS02085 (RDV58_02085) | comYD | 416926..417330 (+) | 405 | WP_002264246.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| RDV58_RS02090 (RDV58_02090) | comYE | 417302..417595 (+) | 294 | WP_002263439.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| RDV58_RS02095 (RDV58_02095) | comYF | 417582..418016 (+) | 435 | WP_002264245.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RDV58_RS02100 (RDV58_02100) | comYG | 417994..418383 (+) | 390 | WP_002263441.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| RDV58_RS02105 (RDV58_02105) | comYH | 418438..419391 (+) | 954 | WP_002264244.1 | class I SAM-dependent methyltransferase | Machinery gene |
| RDV58_RS02110 (RDV58_02110) | - | 419450..420649 (+) | 1200 | WP_002263443.1 | acetate kinase | - |
| RDV58_RS02115 (RDV58_02115) | - | 421202..421447 (+) | 246 | WP_002263444.1 | helix-turn-helix transcriptional regulator | - |
| RDV58_RS02120 (RDV58_02120) | - | 421416..421856 (+) | 441 | WP_002263445.1 | hypothetical protein | - |
| RDV58_RS02125 (RDV58_02125) | - | 421909..422571 (+) | 663 | WP_002266816.1 | CPBP family intramembrane glutamic endopeptidase | - |
| RDV58_RS02130 (RDV58_02130) | proC | 422657..423427 (-) | 771 | WP_002267840.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36258.54 Da Isoelectric Point: 5.2379
>NTDB_id=874575 RDV58_RS02105 WP_002264244.1 418438..419391(+) (comYH) [Streptococcus mutans strain LMG 14558]
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDVIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILAVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDVIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILAVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF
Nucleotide
Download Length: 954 bp
>NTDB_id=874575 RDV58_RS02105 WP_002264244.1 418438..419391(+) (comYH) [Streptococcus mutans strain LMG 14558]
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGATGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATGTCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTAGCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGATGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATGTCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTAGCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
99.685 |
100 |
0.997 |
| comYH | Streptococcus mutans UA140 |
99.685 |
100 |
0.997 |