Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RDV54_RS08545 Genome accession   NZ_CP133471
Coordinates   1781691..1783187 (+) Length   498 a.a.
NCBI ID   WP_000759915.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776691..1788187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08525 (RDV54_08525) endA 1776783..1777607 (+) 825 WP_023947085.1 DNA-entry nuclease EndA Machinery gene
  RDV54_RS08530 (RDV54_08530) - 1777874..1779205 (+) 1332 WP_000390033.1 hemolysin family protein -
  RDV54_RS08540 (RDV54_08540) amiA3 1779636..1781624 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  RDV54_RS08545 (RDV54_08545) amiC 1781691..1783187 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  RDV54_RS08550 (RDV54_08550) amiD 1783187..1784113 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  RDV54_RS08555 (RDV54_08555) amiE 1784122..1785189 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS08560 (RDV54_08560) amiF 1785200..1786126 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  RDV54_RS08565 (RDV54_08565) - 1786530..1787408 (-) 879 WP_001049302.1 LysR family transcriptional regulator -
  RDV54_RS08570 (RDV54_08570) - 1787536..1787886 (-) 351 WP_000208711.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55788.31 Da        Isoelectric Point: 9.3386

>NTDB_id=874529 RDV54_RS08545 WP_000759915.1 1781691..1783187(+) (amiC) [Streptococcus mitis strain LMG 14557]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANSPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGF
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=874529 RDV54_RS08545 WP_000759915.1 1781691..1783187(+) (amiC) [Streptococcus mitis strain LMG 14557]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCCTTGGTTTCTATCTTCTTAGTAACAACCTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCTACAACTGCTGATAAACGTG
ATAACTATGAGAATACCGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAAAGCTAGC
CAGATGGATGCTTCTGTAACAGTTGAAGCCAATGATACCAACAAGGCTATCTATGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCCTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACGCGTGAAATCCCGATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGATCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTACCTT
CGTTTTGAAAACGATCCAGCGATCGGATGGTCCTTGGTCGGTTCAGGAACAAAACACAAATATCTCTTGTACTTCAACAG
TCAGTTCCCGTTTGTGCATCAAAACTTTGTGAACATTAATTTAGGTGACTCTTATCCAACCTATGCTAATAGCCCTGTTT
TACAGGTCATTACTCAAGGACAAGGGCAAACAAAAACATCTCAAGTTCAGTTCCCAACAGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTACAAATCGCCTAGTCAGGCTGATTCTCGTGAAGTAGCCAACTATGGGAAAGATGACCCATA
TACTGCAACTGAAAGCAACTACCAATATCCTTCTATGATTGCTAGCTCTGCAGTCGTTGGATTGATTGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAATACTTGGATTGATAGCTTCTCAACAGGGTTT
TTGACCTTCTTGATGGCCCTTCCAACCATTGCCTTGGTTTACATTGTTCGTTTGATTGGATCATCAATTGGTCTTCCAGA
TTCATTCCCTATTTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTGATTCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAGGACTTTGTTCGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCGTTAT
CGGGGTTATTGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761