Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RDV54_RS08560 Genome accession   NZ_CP133471
Coordinates   1785200..1786126 (+) Length   308 a.a.
NCBI ID   WP_001291284.1    Uniprot ID   V8I8Q2
Organism   Streptococcus mitis strain LMG 14557     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780200..1791126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08545 (RDV54_08545) amiC 1781691..1783187 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  RDV54_RS08550 (RDV54_08550) amiD 1783187..1784113 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  RDV54_RS08555 (RDV54_08555) amiE 1784122..1785189 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS08560 (RDV54_08560) amiF 1785200..1786126 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  RDV54_RS08565 (RDV54_08565) - 1786530..1787408 (-) 879 WP_001049302.1 LysR family transcriptional regulator -
  RDV54_RS08570 (RDV54_08570) - 1787536..1787886 (-) 351 WP_000208711.1 helix-turn-helix domain-containing protein -
  RDV54_RS08575 (RDV54_08575) - 1788160..1789785 (+) 1626 WP_000200491.1 malolactic enzyme -
  RDV54_RS08580 (RDV54_08580) - 1789987..1790106 (+) 120 Protein_1637 IS630 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34777.80 Da        Isoelectric Point: 6.5105

>NTDB_id=874532 RDV54_RS08560 WP_001291284.1 1785200..1786126(+) (amiF) [Streptococcus mitis strain LMG 14557]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=874532 RDV54_RS08560 WP_001291284.1 1785200..1786126(+) (amiF) [Streptococcus mitis strain LMG 14557]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CCATCATCGGTCTTAATGATACAAGTAATGGGGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTTCAAGATCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTGGGGCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTGCGTGC
TCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCTGTCG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAAGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTGGCGCGTTACCAACAAGGGTTAAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8I8Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus salivarius strain HSISS4

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847