Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RDV54_RS08550 Genome accession   NZ_CP133471
Coordinates   1783187..1784113 (+) Length   308 a.a.
NCBI ID   WP_000103691.1    Uniprot ID   A0A3R9MHI7
Organism   Streptococcus mitis strain LMG 14557     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778187..1789113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08540 (RDV54_08540) amiA3 1779636..1781624 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  RDV54_RS08545 (RDV54_08545) amiC 1781691..1783187 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  RDV54_RS08550 (RDV54_08550) amiD 1783187..1784113 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  RDV54_RS08555 (RDV54_08555) amiE 1784122..1785189 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS08560 (RDV54_08560) amiF 1785200..1786126 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  RDV54_RS08565 (RDV54_08565) - 1786530..1787408 (-) 879 WP_001049302.1 LysR family transcriptional regulator -
  RDV54_RS08570 (RDV54_08570) - 1787536..1787886 (-) 351 WP_000208711.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34541.57 Da        Isoelectric Point: 9.6860

>NTDB_id=874530 RDV54_RS08550 WP_000103691.1 1783187..1784113(+) (amiD) [Streptococcus mitis strain LMG 14557]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=874530 RDV54_RS08550 WP_000103691.1 1783187..1784113(+) (amiD) [Streptococcus mitis strain LMG 14557]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCTATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAGAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTTTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTAATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTGACGACATGGATTGGGATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTATCGTGACTTGGAATACAACTTGGCGTCACGTACTCTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCAATTACCGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTATCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815