Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RDV54_RS08540 Genome accession   NZ_CP133471
Coordinates   1779636..1781624 (+) Length   662 a.a.
NCBI ID   WP_000749582.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774636..1786624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08510 (RDV54_08510) - 1775026..1775256 (+) 231 WP_000250399.1 DUF1146 family protein -
  RDV54_RS08515 (RDV54_08515) murA 1775280..1776563 (+) 1284 WP_000411901.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RDV54_RS08520 (RDV54_08520) - 1776556..1776744 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  RDV54_RS08525 (RDV54_08525) endA 1776783..1777607 (+) 825 WP_023947085.1 DNA-entry nuclease EndA Machinery gene
  RDV54_RS08530 (RDV54_08530) - 1777874..1779205 (+) 1332 WP_000390033.1 hemolysin family protein -
  RDV54_RS08540 (RDV54_08540) amiA3 1779636..1781624 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  RDV54_RS08545 (RDV54_08545) amiC 1781691..1783187 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  RDV54_RS08550 (RDV54_08550) amiD 1783187..1784113 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  RDV54_RS08555 (RDV54_08555) amiE 1784122..1785189 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS08560 (RDV54_08560) amiF 1785200..1786126 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72530.86 Da        Isoelectric Point: 4.9296

>NTDB_id=874528 RDV54_RS08540 WP_000749582.1 1779636..1781624(+) (amiA3) [Streptococcus mitis strain LMG 14557]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFVTTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKSVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFADGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVLKGGSTRLYLGIDQNTDASVVSKLGLADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=874528 RDV54_RS08540 WP_000749582.1 1779636..1781624(+) (amiA3) [Streptococcus mitis strain LMG 14557]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTCTATCAAACAGATCCAGAAACTTTGGATTATATCGTCAGCA
ATATCGATTCAACATCATTCGTCACAACAAATGCTGTAGATGGTTTGTTGGCTAATGATAAATATGGTAACTTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACATATACCTATAAAATCCGTAAGGATGCTAAATGGGTGAC
AGCAGAGGGAGAGGAATACGCTCCTGTAACTGCTAAAGACTTCGTTACTGGTTTGAAACACGCCGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGATTAGAAGCCTATATCAAGGGTGAAACAAGCGATTTTTCAACCGTT
GGAGTAAAAGCACTTGATGATCAAACACTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACCACTAG
TGGTGTTTTGATGCCGGTTAATGAAGAATTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACCGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTAAAATCTGTAACTCCAAAATCATCTATCGAGATGGCTAAAAATGATGCTTACTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAAGATGTGATTGCCAAAGGTTT
TGCTGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTTAAAGATA
ACATTTACTTTAATGAACCAGGAGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACCTATAATCATACTGCC
AAAACAAGTGATGCTCAAAAGACATCTACTCAGAAAGCATTGCTAAACAAGGAATTCCGTCAAGCCTTGAACTTTGCTGT
CGATCGCAATTCTTACTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGTAATACATTCGCACCATATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTAGCAGATTCTCAAAATGGCCTTTACAATGAAGAAAAAGCGAAAGAAGTCTTTGCTAAAGCCAAATCAAGTCT
ACAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCCTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGCGCTCCAACAGCTAAAGAGCAAGACTGGGATATCCATACCTTGCTAGGATGGAACCCGGA
CTATCAAGATCCTTCTACTTTCTTGGATCAATTCGTCCTTAAGGGAGGAAGCACTCGCCTTTACCTTGGTATTGACCAAA
ACACAGATGCATCAGTAGTAAGCAAACTTGGTTTAGCTGACTATGGAAAATTACTTGATGACGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCGGTGGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCTTCATATTCTGTAGCCGGCCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAGTCAAACGAAAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.819

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.518

100

0.547
  amiA Streptococcus salivarius strain HSISS4

53.916

100

0.541