Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   RDV50_RS07390 Genome accession   NZ_CP133462
Coordinates   1505592..1506833 (-) Length   413 a.a.
NCBI ID   WP_137041172.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500592..1511833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS07360 (RDV50_07360) ispH 1501286..1502254 (-) 969 WP_137041175.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RDV50_RS07365 (RDV50_07365) lspA 1502268..1502774 (-) 507 WP_070633008.1 signal peptidase II -
  RDV50_RS07370 (RDV50_07370) glyQ 1502923..1503822 (-) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  RDV50_RS07375 (RDV50_07375) yacG 1503904..1504086 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  RDV50_RS07380 (RDV50_07380) coaE 1504083..1504703 (-) 621 WP_137041174.1 dephospho-CoA kinase -
  RDV50_RS07385 (RDV50_07385) pilD 1504703..1505590 (-) 888 WP_137041173.1 A24 family peptidase Machinery gene
  RDV50_RS07390 (RDV50_07390) pilG 1505592..1506833 (-) 1242 WP_137041172.1 type II secretion system F family protein Machinery gene
  RDV50_RS07395 (RDV50_07395) pilF 1506913..1508592 (-) 1680 WP_003685901.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45892.92 Da        Isoelectric Point: 9.8677

>NTDB_id=874395 RDV50_RS07390 WP_137041172.1 1505592..1506833(-) (pilG) [Neisseria subflava strain LMG 5313]
MAQAEQKRSLFGSRSKGKRFTFEGKNTETERLVHGEVVAKDEEEARKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPSLTQLVMSLSDLFVDYGWIMIILLI
VSAFGLYKLHEKSPTFQKRIDALILRLPVFGAIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVSRLSHLMESIIMVVLGSLIGILLIA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=874395 RDV50_RS07390 WP_137041172.1 1505592..1506833(-) (pilG) [Neisseria subflava strain LMG 5313]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGCTCAAGAAGCAAAGGCAAGCGTTTTACTTTTGAAGGAAAAAATAC
CGAGACCGAACGTCTTGTCCATGGTGAAGTAGTTGCCAAAGACGAAGAAGAAGCACGCAAGAAACTCCAACGCAGAGGCA
TTCGTCCTTTGCGTATCAGCAAAGTTAAAACCGCACGCAAACGCCGTATTACCCAAGAAGACATTACAGTGTTCACCCGC
CAACTGGCAACGATGATGAAGGCAGGCTTACCGCTGATGCAGGCTTTTGAAATCGTTGCGCGCGGCCACTCCAATCCGAG
CATGACCGAAATGCTGATGCAGGTTCGCTCCGATGTCGAACAAGGTAGCGCATTGGGTAAATCGTTCTCCAAATATCCAA
AATATTTCGACCGCTTTTATTGTAATCTGGTTAGCGCAGGCGAGTCCGGCGGCGTACTGGAAAGCCTATTGGACAAACTG
GCTGTCTATAAAGAAAAAACGCAAGCCATTAAGAAAAAGGTTAAAACCGCACTGACCTACCCGATTGCCATTATCGTGGT
GGCAATTGCGCTTATCTTCATTATGATGATGTTTGTACTGCCTGCCTTTAAAGAAGTTTATGCCAATATGGGGGCAGAGC
TGCCAAGCCTTACCCAACTCGTCATGAGCTTGTCCGATTTATTCGTCGACTATGGCTGGATTATGATCATCCTTTTGATT
GTTTCCGCCTTCGGCCTGTACAAACTCCATGAAAAATCGCCTACCTTCCAAAAACGAATCGATGCTCTGATTTTGAGACT
CCCTGTTTTTGGCGCCATCGTCCGTAAAGCAACCATTGCCCGTTGGGCGCGTACGACTTCCACCCTCTTCGCAGCCGGCG
TTCCTTTGGTGGAAGTATTAGATTCAGTTGCAGGCGCATCCGGCAATATTCTCTATGAAGAAGCCACTCAAGACATCCGC
GCCAAGGTAACCCAAGGTCTGTCGCTGACATCCAGTATGCAAAGTACGGATATGTTCCCCAATATGGTGATCCAAATGGC
GGCCATCGGCGAAGAGTCAGGCTCTTTGGACGATATGCTGAACAAAGCTGCCGAATTCTACGAAGATGAAGTAGACAACT
CCGTCTCCCGATTGTCTCACTTGATGGAGTCTATCATCATGGTGGTATTGGGTTCGCTCATCGGTATCTTGCTGATTGCC
ATGTATCTGCCGCTGTTTAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.782

97.821

0.702
  pilG Neisseria meningitidis 44/76-A

70.792

97.821

0.692
  pilC Acinetobacter baylyi ADP1

46.115

96.61

0.446
  pilC Legionella pneumophila strain ERS1305867

46.096

96.126

0.443
  pilC Acinetobacter baumannii D1279779

45.98

96.368

0.443
  pilC Pseudomonas stutzeri DSM 10701

45.75

96.852

0.443
  pilC Vibrio cholerae strain A1552

38.25

96.852

0.37
  pilC Thermus thermophilus HB27

38.107

94.673

0.361