Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RCI27_RS28825 Genome accession   NZ_CP133369
Coordinates   5574863..5575444 (-) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5569863..5580444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI27_RS28800 (RCI27_28800) - 5570705..5571163 (+) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  RCI27_RS28805 (RCI27_28805) rapZ 5571184..5572065 (+) 882 WP_000138458.1 RNase adapter RapZ -
  RCI27_RS28810 (RCI27_28810) yvcK 5572069..5573022 (+) 954 WP_000712190.1 YvcK family protein -
  RCI27_RS28815 (RCI27_28815) whiA 5573111..5574061 (+) 951 WP_000006563.1 DNA-binding protein WhiA -
  RCI27_RS28820 (RCI27_28820) - 5574085..5574333 (+) 249 WP_000250307.1 HPr family phosphocarrier protein -
  RCI27_RS28825 (RCI27_28825) clpP 5574863..5575444 (-) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RCI27_RS28830 (RCI27_28830) - 5575685..5576554 (-) 870 WP_000018929.1 DUF421 domain-containing protein -
  RCI27_RS28835 (RCI27_28835) - 5576575..5576781 (-) 207 WP_000215916.1 DUF1657 domain-containing protein -
  RCI27_RS28840 (RCI27_28840) spoVAE 5576793..5577143 (-) 351 WP_000575919.1 stage V sporulation protein AE -
  RCI27_RS28845 (RCI27_28845) spoVAD 5577140..5578156 (-) 1017 WP_000938972.1 stage V sporulation protein AD -
  RCI27_RS28850 (RCI27_28850) spoVAC 5578157..5578633 (-) 477 WP_000095399.1 stage V sporulation protein AC -
  RCI27_RS28855 (RCI27_28855) - 5578663..5579148 (-) 486 WP_001228545.1 YhcN/YlaJ family sporulation lipoprotein -
  RCI27_RS28860 (RCI27_28860) - 5579242..5579448 (-) 207 WP_000216166.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=873681 RCI27_RS28825 WP_001049162.1 5574863..5575444(-) (clpP) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=873681 RCI27_RS28825 WP_001049162.1 5574863..5575444(-) (clpP) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCAGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554