Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RCI27_RS12350 Genome accession   NZ_CP133369
Coordinates   2370433..2371014 (+) Length   193 a.a.
NCBI ID   WP_000991620.1    Uniprot ID   A0A9W5QUF9
Organism   Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365433..2376014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI27_RS12315 (RCI27_12315) - 2366056..2366520 (-) 465 WP_000024965.1 hypothetical protein -
  RCI27_RS12320 (RCI27_12320) - 2366993..2367211 (+) 219 WP_000337734.1 hypothetical protein -
  RCI27_RS12325 (RCI27_12325) - 2367219..2367821 (+) 603 WP_000342606.1 DUF6944 family repetitive protein -
  RCI27_RS12330 (RCI27_12330) - 2368046..2368480 (-) 435 WP_001190875.1 GNAT family N-acetyltransferase -
  RCI27_RS12335 (RCI27_12335) rpiA 2368595..2369257 (-) 663 WP_016077570.1 ribose 5-phosphate isomerase A -
  RCI27_RS12340 (RCI27_12340) - 2369262..2369582 (-) 321 WP_001125391.1 2Fe-2S iron-sulfur cluster-binding protein -
  RCI27_RS12345 (RCI27_12345) - 2369725..2370411 (+) 687 WP_000337517.1 RNA polymerase subunit sigma-70 -
  RCI27_RS12350 (RCI27_12350) clpP 2370433..2371014 (+) 582 WP_000991620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  RCI27_RS12355 (RCI27_12355) - 2371058..2371915 (-) 858 WP_001227626.1 glycine betaine ABC transporter substrate-binding protein -
  RCI27_RS12360 (RCI27_12360) - 2372087..2373292 (+) 1206 WP_000370608.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  RCI27_RS12365 (RCI27_12365) - 2373285..2374121 (+) 837 WP_001059837.1 proline/glycine betaine ABC transporter permease -
  RCI27_RS12370 (RCI27_12370) - 2374175..2374411 (-) 237 WP_000553346.1 hypothetical protein -
  RCI27_RS12375 (RCI27_12375) - 2374629..2374796 (+) 168 WP_000508401.1 hypothetical protein -
  RCI27_RS12380 (RCI27_12380) - 2374887..2375387 (+) 501 WP_003278553.1 HIT family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21266.48 Da        Isoelectric Point: 4.9174

>NTDB_id=873652 RCI27_RS12350 WP_000991620.1 2370433..2371014(+) (clpP) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKEYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=873652 RCI27_RS12350 WP_000991620.1 2370433..2371014(+) (clpP) [Bacillus thuringiensis serovar tenebrionis strain ten BI 256-82]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGCTATTAAAAGA
CCGCATTATTATTATCGGTTCAGAAATTAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAACTATTATTTTTAGAAGCAG
AAGATGCAGAAAAAGATATATATTTATATATCAATAGCCCAGGAGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTACAAACGCTATGCATGGGCTTTGCGGCATCATTTGGTGCATTGTTATTATTATCAGG
AGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAGGGGCAAGCAA
CAGAAATTGAAATAACAGCAAAAAGGATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCGCATGATACAGAAAGAGATTATTTTATGACCGCAGAAGAAGCTAAGGAATATGGAATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.11

98.964

0.684
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.254

97.927

0.668
  clpP Streptococcus thermophilus LMD-9

56.25

99.482

0.56
  clpP Streptococcus pneumoniae Rx1

56.25

99.482

0.56
  clpP Streptococcus pneumoniae D39

56.25

99.482

0.56
  clpP Streptococcus pneumoniae TIGR4

56.25

99.482

0.56
  clpP Streptococcus pneumoniae R6

56.25

99.482

0.56
  clpP Streptococcus thermophilus LMG 18311

56.25

99.482

0.56
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus mutans UA159

54.497

97.927

0.534
  clpP Lactococcus lactis subsp. cremoris KW2

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

97.927

0.503