Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   Q9Q86_RS14805 Genome accession   NZ_CP133162
Coordinates   3048838..3049896 (+) Length   352 a.a.
NCBI ID   WP_004951546.1    Uniprot ID   -
Organism   Acinetobacter sp. A22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3043838..3054896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9Q86_RS14790 mraY 3044090..3045208 (+) 1119 WP_112986738.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  Q9Q86_RS14795 - 3045263..3046081 (+) 819 WP_004964610.1 putative RNA methyltransferase -
  Q9Q86_RS14800 ponA 3046096..3048675 (-) 2580 WP_112986739.1 penicillin-binding protein PBP1a -
  Q9Q86_RS14805 pilM 3048838..3049896 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  Q9Q86_RS14810 pilN 3049896..3050540 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  Q9Q86_RS14815 pilO 3050537..3051277 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q9Q86_RS14820 pilP 3051277..3051804 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  Q9Q86_RS14825 pilQ 3051866..3054004 (+) 2139 WP_171293826.1 type IV pilus secretin PilQ Machinery gene
  Q9Q86_RS14830 aroK 3054024..3054584 (+) 561 WP_112986741.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39046.77 Da        Isoelectric Point: 4.5976

>NTDB_id=872209 Q9Q86_RS14805 WP_004951546.1 3048838..3049896(+) (pilM) [Acinetobacter sp. A22]
MLRLYRKPNKGLVGVDISSTTVKLLELSVKNGRYWVESYALMPLPENSVVEKSILNPEAVGDALERVVNLANPHTTNVAI
AVPTSMVINKIIEMDADMTDDEREVQIRMDAEQYIPFPLDEVSLDFEVLADRLANPNRVNVLLVATRTENVDSRVEVLEL
AGLKAKIAEVESYAMERAFSVFADTLPMGANTVGILDIGHTMTTLSVMQKGKIIYTREQVFGGKQLTQDVQNRYGLSFEE
AGRAKKERSLPDDYDTEVLEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQIDIKKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=872209 Q9Q86_RS14805 WP_004951546.1 3048838..3049896(+) (pilM) [Acinetobacter sp. A22]
GTGCTCAGGTTATATCGTAAACCAAATAAGGGGTTAGTGGGTGTCGATATTAGTTCGACAACTGTTAAGTTATTGGAACT
CTCTGTTAAGAACGGTCGATATTGGGTTGAAAGTTATGCATTGATGCCACTACCTGAAAATAGTGTGGTTGAGAAAAGCA
TTTTAAACCCAGAAGCAGTTGGCGACGCGCTTGAACGAGTTGTTAATCTTGCAAACCCTCACACTACCAATGTGGCTATT
GCCGTGCCTACTTCGATGGTCATTAATAAGATCATCGAGATGGATGCTGACATGACGGATGATGAGCGGGAAGTTCAAAT
TCGTATGGATGCAGAGCAATATATTCCATTCCCATTAGATGAAGTTAGTTTGGACTTTGAAGTCTTAGCTGATCGATTGG
CAAATCCTAATCGTGTCAATGTGTTATTAGTCGCTACGCGTACTGAGAATGTCGATTCACGTGTTGAAGTTCTTGAGTTA
GCAGGTCTAAAGGCAAAGATTGCTGAAGTCGAAAGCTATGCGATGGAACGTGCTTTTAGTGTATTCGCTGATACGCTACC
TATGGGTGCGAATACAGTGGGTATTCTAGATATTGGGCATACGATGACGACGTTATCGGTCATGCAAAAAGGTAAAATTA
TCTATACTCGTGAGCAAGTGTTTGGTGGAAAACAACTTACTCAAGACGTTCAAAATCGCTATGGTTTATCTTTTGAAGAA
GCTGGTCGAGCTAAAAAAGAAAGAAGTTTGCCAGATGATTACGATACCGAAGTTTTAGAACCGTTTCTTGATGCAGTTGT
GCAACAAGCTGCACGTTCGCTGCAATTCTTTTTCTCATCATCTCAATTTAATGAGATTGACCACATCCTGTTAGCAGGTG
GTAATGCCAATATTCCAGGTCTAGCTAAACTGTTGCAACAAAAGCTAGGTTATCGAGTAACGATTGCCAACCCATTTTTA
CAAATGGGCTTTTCTCCCCAAATCGATATCAAAAAAATAGAAAATGATGCCTCATCCTTGATGGTGGCATGTGGATTAGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

88.352

100

0.884
  comM Acinetobacter nosocomialis M2

88.068

100

0.881
  comM Acinetobacter baylyi ADP1

83.523

100

0.835
  pilM Legionella pneumophila strain ERS1305867

41.525

100

0.418