Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   Q9Q86_RS14815 Genome accession   NZ_CP133162
Coordinates   3050537..3051277 (+) Length   246 a.a.
NCBI ID   WP_075696026.1    Uniprot ID   -
Organism   Acinetobacter sp. A22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3045537..3056277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9Q86_RS14800 ponA 3046096..3048675 (-) 2580 WP_112986739.1 penicillin-binding protein PBP1a -
  Q9Q86_RS14805 pilM 3048838..3049896 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  Q9Q86_RS14810 pilN 3049896..3050540 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  Q9Q86_RS14815 pilO 3050537..3051277 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q9Q86_RS14820 pilP 3051277..3051804 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  Q9Q86_RS14825 pilQ 3051866..3054004 (+) 2139 WP_171293826.1 type IV pilus secretin PilQ Machinery gene
  Q9Q86_RS14830 aroK 3054024..3054584 (+) 561 WP_112986741.1 shikimate kinase AroK -
  Q9Q86_RS14835 aroB 3054605..3055687 (+) 1083 WP_112986742.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27775.32 Da        Isoelectric Point: 4.6196

>NTDB_id=872211 Q9Q86_RS14815 WP_075696026.1 3050537..3051277(+) (pilO) [Acinetobacter sp. A22]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=872211 Q9Q86_RS14815 WP_075696026.1 3050537..3051277(+) (pilO) [Acinetobacter sp. A22]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCACTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAACTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAAAACATTCGCTTGGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATAGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACACGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AAACCTACCGTTATGTGGGTGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683