Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RBH91_RS20295 Genome accession   NZ_CP133085
Coordinates   4048826..4049398 (-) Length   190 a.a.
NCBI ID   WP_150194941.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4043826..4054398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS20270 - 4044148..4044558 (-) 411 WP_307892723.1 CBS domain-containing protein -
  RBH91_RS20275 - 4044625..4045578 (-) 954 WP_307892724.1 magnesium transporter CorA family protein -
  RBH91_RS20280 - 4045745..4047043 (+) 1299 WP_307892725.1 hemolysin family protein -
  RBH91_RS20285 - 4047194..4048405 (+) 1212 WP_076759214.1 ammonium transporter -
  RBH91_RS20290 - 4048425..4048775 (+) 351 WP_076759217.1 P-II family nitrogen regulator -
  RBH91_RS20295 clpP 4048826..4049398 (-) 573 WP_150194941.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RBH91_RS20300 - 4049411..4050019 (-) 609 WP_307892726.1 RNA polymerase sigma factor -
  RBH91_RS20305 - 4050153..4051037 (-) 885 WP_076759228.1 M23 family metallopeptidase -
  RBH91_RS20310 - 4051247..4051744 (+) 498 WP_307892727.1 N-acetyltransferase family protein -
  RBH91_RS20315 - 4051793..4052221 (-) 429 WP_076759230.1 DUF5392 family protein -
  RBH91_RS20320 cls 4052468..4053916 (+) 1449 WP_307894803.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21123.37 Da        Isoelectric Point: 5.3844

>NTDB_id=871771 RBH91_RS20295 WP_150194941.1 4048826..4049398(-) (clpP) [Bacillus swezeyi strain EA208]
MNTIPYVIERTAGGERSYDIFSRLLKDRIIMIGSECTDDLANRVTAQLLFLSAEDDEKDISIYINSPGGSTSAGYAILDT
MEYVKPDIRTICVGMAASMGAILLTGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLKKKIEQFFHERTGQ
PIEKLKADMERDYFMNADEAKEYGIIDAIL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=871771 RBH91_RS20295 WP_150194941.1 4048826..4049398(-) (clpP) [Bacillus swezeyi strain EA208]
ATGAACACCATTCCTTATGTCATTGAGAGAACAGCGGGGGGAGAAAGGTCGTACGATATATTTTCAAGGCTTCTAAAGGA
CCGGATCATTATGATCGGCTCTGAATGTACGGACGATCTCGCCAACCGTGTCACCGCCCAGCTGCTGTTTCTGTCAGCGG
AGGATGATGAAAAGGATATTTCGATTTATATCAACAGTCCCGGCGGTTCAACCTCAGCCGGATACGCGATTTTAGACACG
ATGGAATATGTGAAACCGGACATCCGCACAATCTGTGTCGGAATGGCGGCTTCAATGGGAGCGATCCTGCTCACAGGCGG
AACGAAAGGAAAGCGATATGCCCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGTGTCAAAGGCCAAGCGA
CTGACATGGAGATTTCAGCCAAGCGCATTATCAAACTGAAGAAAAAAATCGAGCAGTTTTTTCATGAACGGACGGGTCAG
CCCATTGAAAAATTAAAAGCTGACATGGAACGCGATTATTTTATGAATGCAGACGAGGCAAAAGAGTACGGCATCATCGA
TGCCATCTTATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

64.737

100

0.647
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.497

98.421

0.605
  clpP Streptococcus thermophilus LMG 18311

56.085

99.474

0.558
  clpP Streptococcus thermophilus LMD-9

56.085

99.474

0.558
  clpP Streptococcus pneumoniae D39

55.026

99.474

0.547
  clpP Streptococcus pneumoniae Rx1

55.026

99.474

0.547
  clpP Streptococcus pneumoniae R6

55.026

99.474

0.547
  clpP Streptococcus pneumoniae TIGR4

55.026

99.474

0.547
  clpP Streptococcus pyogenes JRS4

53.439

99.474

0.532
  clpP Streptococcus pyogenes MGAS315

53.439

99.474

0.532
  clpP Streptococcus mutans UA159

53.439

99.474

0.532
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

99.474

0.526
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

99.474

0.516