Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RBH91_RS19280 Genome accession   NZ_CP133085
Coordinates   3849271..3849867 (+) Length   198 a.a.
NCBI ID   WP_003185550.1    Uniprot ID   A0A1J6GJE1
Organism   Bacillus swezeyi strain EA208     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3835967..3849867 3849271..3849867 within 0


Gene organization within MGE regions


Location: 3835967..3849867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS19160 - 3835967..3836584 (+) 618 WP_307892569.1 hypothetical protein -
  RBH91_RS19165 - 3836679..3837047 (+) 369 WP_307892570.1 YolD-like family protein -
  RBH91_RS19170 - 3837204..3837497 (+) 294 WP_307892571.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  RBH91_RS19175 - 3837872..3838441 (+) 570 WP_307892572.1 hypothetical protein -
  RBH91_RS19180 - 3838692..3839762 (-) 1071 WP_307892573.1 peptidoglycan-binding protein -
  RBH91_RS19185 - 3839808..3840071 (-) 264 WP_307892574.1 phage holin -
  RBH91_RS19190 - 3840087..3840356 (-) 270 WP_307892575.1 hemolysin XhlA family protein -
  RBH91_RS19195 - 3840420..3840602 (-) 183 WP_307892576.1 XkdX family protein -
  RBH91_RS19200 - 3840599..3841150 (-) 552 WP_307892577.1 hypothetical protein -
  RBH91_RS19205 - 3841202..3841558 (-) 357 Protein_3756 BppU family phage baseplate upper protein -
  RBH91_RS19210 - 3841639..3841863 (-) 225 WP_307892578.1 hypothetical protein -
  RBH91_RS19215 - 3841832..3842206 (-) 375 WP_307892579.1 HNH endonuclease signature motif containing protein -
  RBH91_RS19220 - 3842258..3842902 (-) 645 WP_307892580.1 hypothetical protein -
  RBH91_RS19225 - 3843036..3843455 (-) 420 WP_307892581.1 hypothetical protein -
  RBH91_RS19230 - 3844012..3844554 (-) 543 WP_307892582.1 site-specific integrase -
  RBH91_RS19235 - 3844554..3844994 (-) 441 WP_307892583.1 ArpU family phage packaging/lysis transcriptional regulator -
  RBH91_RS19240 - 3845245..3846039 (-) 795 WP_307892584.1 hypothetical protein -
  RBH91_RS19245 - 3846180..3846443 (-) 264 WP_307892585.1 hypothetical protein -
  RBH91_RS19250 - 3846483..3846731 (-) 249 WP_307892586.1 hypothetical protein -
  RBH91_RS19255 - 3846728..3847036 (-) 309 WP_307892587.1 hypothetical protein -
  RBH91_RS19260 - 3847166..3847612 (+) 447 WP_307892588.1 ImmA/IrrE family metallo-endopeptidase -
  RBH91_RS19265 - 3847624..3848340 (+) 717 WP_307892589.1 Arm DNA-binding domain-containing protein -
  RBH91_RS19270 - 3848505..3848741 (+) 237 WP_307892590.1 tyrosine-type recombinase/integrase -
  RBH91_RS19280 clpP 3849271..3849867 (+) 597 WP_003185550.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21803.99 Da        Isoelectric Point: 4.7982

>NTDB_id=871765 RBH91_RS19280 WP_003185550.1 3849271..3849867(+) (clpP) [Bacillus swezeyi strain EA208]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=871765 RBH91_RS19280 WP_003185550.1 3849271..3849867(+) (clpP) [Bacillus swezeyi strain EA208]
ATGAATTTAATACCTACAGTCATTGAACAGACGAATCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA
CCGGATCATTATGCTGGGCTCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCACAGCTTTTATTCTTAGAAGCTG
AAGATCCTGAAAAAGATATCAGCATTTACATTAACAGCCCCGGCGGCTCCATTACAGCCGGTATGGCGATTTATGACACA
ATGCAGTTTATTAAGCCGCAAGTCTCTACGATTTGTACGGGAATGGCAGCATCTATGGGTGCGTTCCTTCTTGCAGCCGG
CGAGAAAGGGAAACGCTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCGCTGGGCGGAGCTCAAGGTCAAGCGA
CTGAAATTGAAATTGCGGCAAAACGCATTCTTTCATTGCGCGACAAGCTGAACAAAATCCTTGCTGAGCGCACAGGACAG
CCGCTTGAAGTGATTGAGCGCGATACTGACCGCGACAACTTCAAAACAGCTGAAGAAGCAAAAGAATACGGCTTGATTGA
TAAAGTGCTGACACGCAATATCGATGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.229

96.97

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

56.995

97.475

0.556
  clpP Streptococcus pneumoniae Rx1

56.995

97.475

0.556
  clpP Streptococcus pneumoniae D39

56.995

97.475

0.556
  clpP Streptococcus pneumoniae R6

56.995

97.475

0.556
  clpP Streptococcus pneumoniae TIGR4

56.995

97.475

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.922

97.475

0.535