Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RA177_RS14670 Genome accession   NZ_CP132599
Coordinates   2868979..2869620 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain PL23A     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863979..2874620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA177_RS14635 (RA177_14650) - 2865105..2865536 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  RA177_RS14640 (RA177_14655) - 2865536..2865877 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  RA177_RS14645 (RA177_14660) - 2865870..2867348 (+) 1479 WP_024423317.1 Na+/H+ antiporter subunit D -
  RA177_RS14650 (RA177_14665) - 2867355..2867834 (+) 480 WP_024423318.1 Na+/H+ antiporter subunit E -
  RA177_RS14655 (RA177_14670) - 2867834..2868115 (+) 282 WP_024423319.1 Na(+)/H(+) antiporter subunit F1 -
  RA177_RS14660 (RA177_14675) mnhG 2868099..2868473 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  RA177_RS14665 (RA177_14680) - 2868566..2868955 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  RA177_RS14670 (RA177_14685) comA 2868979..2869620 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  RA177_RS14675 (RA177_14690) comP 2869701..2872013 (-) 2313 WP_024423323.1 ATP-binding protein Regulator
  RA177_RS14680 (RA177_14695) comX 2872067..2872237 (-) 171 WP_073207246.1 competence pheromone ComX -
  RA177_RS14685 (RA177_14700) - 2872234..2873148 (-) 915 WP_024423324.1 polyprenyl synthetase family protein -
  RA177_RS14690 (RA177_14705) degQ 2873300..2873440 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  RA177_RS14695 (RA177_14710) - 2873946..2874302 (+) 357 WP_024423325.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=869605 RA177_RS14670 WP_024423322.1 2868979..2869620(-) (comA) [Bacillus safensis strain PL23A]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=869605 RA177_RS14670 WP_024423322.1 2868979..2869620(-) (comA) [Bacillus safensis strain PL23A]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATT
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAAATAGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723