Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RAM03_RS10385 Genome accession   NZ_CP132382
Coordinates   2300772..2301077 (-) Length   101 a.a.
NCBI ID   WP_065650801.1    Uniprot ID   -
Organism   Gilliamella apis strain ESL0169     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2295772..2306077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM03_RS10360 (RAM03_10360) - 2296444..2297068 (-) 625 Protein_2025 Bax inhibitor-1/YccA family protein -
  RAM03_RS10365 (RAM03_10365) moaE 2297184..2297627 (-) 444 WP_110453053.1 molybdopterin synthase catalytic subunit MoaE -
  RAM03_RS10370 (RAM03_10370) moaD 2297632..2297877 (-) 246 WP_086353913.1 molybdopterin synthase sulfur carrier subunit -
  RAM03_RS10375 (RAM03_10375) moaC 2297874..2298368 (-) 495 WP_065577707.1 cyclic pyranopterin monophosphate synthase MoaC -
  RAM03_RS10380 (RAM03_10380) priA 2298563..2300731 (+) 2169 WP_110453052.1 primosomal protein N' -
  RAM03_RS10385 (RAM03_10385) comEA/comE1 2300772..2301077 (-) 306 WP_065650801.1 ComEA family DNA-binding protein Machinery gene
  RAM03_RS10390 (RAM03_10390) - 2301230..2303098 (-) 1869 WP_086364868.1 SurA N-terminal domain-containing protein -
  RAM03_RS10395 (RAM03_10395) lon 2303249..2305660 (-) 2412 WP_110453051.1 endopeptidase La -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11204.04 Da        Isoelectric Point: 7.9749

>NTDB_id=868907 RAM03_RS10385 WP_065650801.1 2300772..2301077(-) (comEA/comE1) [Gilliamella apis strain ESL0169]
MKIFTILCFLFSSFFFSTISFAESKSETTTTEVQKQVVQVNINTATAEELTKGLIGIGMSKAQKIIEYREKFGPFISIEQ
LKEVSGIGQATLDKNIGKITL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=868907 RAM03_RS10385 WP_065650801.1 2300772..2301077(-) (comEA/comE1) [Gilliamella apis strain ESL0169]
ATGAAAATTTTTACAATATTATGTTTTTTATTCTCAAGCTTCTTTTTTTCAACTATTAGTTTTGCGGAATCAAAATCAGA
AACCACTACCACAGAGGTACAAAAACAAGTTGTTCAAGTTAATATCAATACCGCAACAGCTGAAGAGTTAACTAAAGGGT
TAATTGGTATTGGTATGAGTAAAGCTCAGAAGATTATTGAATATCGAGAAAAATTTGGTCCTTTTATTTCTATAGAGCAG
TTAAAAGAGGTTTCAGGTATTGGTCAAGCAACACTAGATAAAAATATAGGAAAAATTACATTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

52.475

100

0.525
  comE1/comEA Haemophilus influenzae Rd KW20

44.118

100

0.446
  comEA Vibrio cholerae C6706

43.689

100

0.446
  comEA Vibrio cholerae strain A1552

43.689

100

0.446
  comEA Vibrio campbellii strain DS40M4

42.574

100

0.426
  comEA Vibrio parahaemolyticus RIMD 2210633

40.594

100

0.406
  comEA Legionella pneumophila str. Paris

39.175

96.04

0.376
  comEA Legionella pneumophila strain ERS1305867

39.175

96.04

0.376