NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	Q9318_RS03940	Genome accession	NZ_CP132229
Coordinates	777645..778247 (+)	Length	200 a.a.
NCBI ID	WP_071794733.1	Uniprot ID	A0A3L8GDT3
Organism	Streptococcus iniae strain BH16-24
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 772645..783247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9318_RS03925 (Q9318_03925)	-	773470..774915 (-)	1446	WP_003101555.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	-
Q9318_RS03930 (Q9318_03930)	-	775003..776655 (+)	1653	WP_003101552.1	polysaccharide biosynthesis protein	-
Q9318_RS03935 (Q9318_03935)	upp	776800..777429 (+)	630	WP_003101549.1	uracil phosphoribosyltransferase	-
Q9318_RS03940 (Q9318_03940)	clpP	777645..778247 (+)	603	WP_071794733.1	ATP-dependent Clp protease proteolytic subunit	Regulator
Q9318_RS03945 (Q9318_03945)	-	778369..778614 (+)	246	WP_003101546.1	hypothetical protein	-
Q9318_RS03950 (Q9318_03950)	-	778743..779213 (+)	471	WP_016356100.1	YlbF family regulator	-
Q9318_RS03955 (Q9318_03955)	-	779189..779467 (+)	279	WP_003101541.1	YlbG family protein	-
Q9318_RS03960 (Q9318_03960)	-	779606..780778 (+)	1173	WP_003101539.1	ABC transporter substrate-binding protein	-
Q9318_RS03965 (Q9318_03965)	-	780838..781707 (+)	870	WP_016356099.1	branched-chain amino acid ABC transporter permease	-
Q9318_RS03970 (Q9318_03970)	-	781711..782664 (+)	954	WP_016356098.1	branched-chain amino acid ABC transporter permease	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 22166.52 Da Isoelectric Point: 6.3409

                                >NTDB_id=867836 Q9318_RS03940 WP_071794733.1 777645..778247(+) (clpP) [Streptococcus iniae strain BH16-24]

MENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDHTKDIYLYVNTPGGSVSAGLAIV

DTMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILAK

NSGKTIKQVHKDAERDYWMSAEETLKYGFIDEIMENNKLK

Nucleotide

Download Length: 603 bp

                                >NTDB_id=867836 Q9318_RS03940 WP_071794733.1 777645..778247(+) (clpP) [Streptococcus iniae strain BH16-24]

ATGGAGAATACTATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAGCGTTCTTACGATATTTACTCTCGTTTACT

AAAAGATCGGATCATCATGTTAACTGGTCCGGTCGAAGACAATATGGCTAACTCTGTCATTGCACAGTTGCTTTTTTTGG

ATGCACAAGATCACACTAAAGATATTTATCTTTATGTTAATACCCCAGGTGGTTCCGTTTCTGCTGGTTTAGCCATTGTT

GATACAATGAACTTTATTAAATCTGATGTTCAAACAATTGTCATGGGAATGGCTGCTTCCATGGGAACAATCATTGCCTC

ATCAGGGACTAAAGGGAAACGGTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTG

GTACGCAGCAATCAGATATGGCAATTGCTGCTGAACATCTCTTAAAAACACGTCACACTCTTGAAAAAATATTGGCAAAA

AATAGTGGAAAAACCATTAAACAAGTTCATAAAGATGCAGAACGTGATTATTGGATGAGTGCAGAAGAAACACTAAAATA

TGGCTTCATTGATGAAATTATGGAAAATAACAAACTTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(15-196)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A3L8GDT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	94.898	98	0.93
clpP	Streptococcus pyogenes MGAS315	94.898	98	0.93
clpP	Streptococcus mutans UA159	91.371	98.5	0.9
clpP	Streptococcus thermophilus LMD-9	90.816	98	0.89
clpP	Streptococcus thermophilus LMG 18311	90.816	98	0.89
clpP	Streptococcus pneumoniae R6	90.769	97.5	0.885
clpP	Streptococcus pneumoniae Rx1	90.769	97.5	0.885
clpP	Streptococcus pneumoniae D39	90.769	97.5	0.885
clpP	Streptococcus pneumoniae TIGR4	90.769	97.5	0.885
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.714	98	0.84
clpP	Lactococcus lactis subsp. cremoris KW2	85.204	98	0.835
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.477	96.5	0.545
clpP	Bacillus subtilis subsp. subtilis str. 168	56.842	95	0.54

Detailed information NTG0867836