Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KI215_RS15715 Genome accession   NZ_AP024601
Coordinates   3174246..3174698 (-) Length   150 a.a.
NCBI ID   WP_212773613.1    Uniprot ID   A0A8D5UJP1
Organism   Polycladomyces abyssicola strain JIR-001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3169246..3179698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI215_RS15690 (JIR001_31720) rplI 3169924..3170370 (-) 447 WP_212773610.1 50S ribosomal protein L9 -
  KI215_RS15695 (JIR001_31730) - 3170367..3172340 (-) 1974 WP_212773611.1 DHH family phosphoesterase -
  KI215_RS15700 (JIR001_31740) - 3172630..3173529 (-) 900 WP_212773612.1 DUF2232 domain-containing protein -
  KI215_RS15705 (JIR001_31750) - 3173537..3173917 (-) 381 WP_246512146.1 MazG-like family protein -
  KI215_RS15710 (JIR001_31760) rpsR 3173970..3174197 (-) 228 WP_205492314.1 30S ribosomal protein S18 -
  KI215_RS15715 (JIR001_31770) ssbA 3174246..3174698 (-) 453 WP_212773613.1 single-stranded DNA-binding protein Machinery gene
  KI215_RS15720 (JIR001_31780) rpsF 3174747..3175037 (-) 291 WP_205492316.1 30S ribosomal protein S6 -
  KI215_RS15725 (JIR001_31790) ychF 3175169..3176272 (-) 1104 WP_212773614.1 redox-regulated ATPase YchF -
  KI215_RS15730 (JIR001_31800) - 3176352..3176564 (-) 213 WP_212775246.1 DUF951 domain-containing protein -
  KI215_RS15735 (JIR001_31810) - 3177100..3178065 (+) 966 WP_212773615.1 hypothetical protein -
  KI215_RS15740 (JIR001_31820) - 3178081..3178236 (+) 156 WP_212773616.1 hypothetical protein -
  KI215_RS15745 (JIR001_31830) - 3178372..3179421 (-) 1050 WP_212773617.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16906.80 Da        Isoelectric Point: 4.5905

>NTDB_id=86380 KI215_RS15715 WP_212773613.1 3174246..3174698(-) (ssbA) [Polycladomyces abyssicola strain JIR-001]
MLNRVVLIGRLTRDPELRYTPSGVAVASFTIAVDRRFTNQQGERETDFIPIVTWRQLAENCANYLKKGRLVGVDGRLQVR
SYENNEGRRVWVTEVVADDVRFLEPAGGASRNPGMEGDSQRFSPKSNNDFDDPFADDGKPIDISDDDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=86380 KI215_RS15715 WP_212773613.1 3174246..3174698(-) (ssbA) [Polycladomyces abyssicola strain JIR-001]
ATGCTGAATCGGGTGGTTCTGATCGGTCGGTTGACCCGGGATCCCGAACTCCGTTACACGCCGAGCGGTGTCGCTGTGGC
TTCCTTCACCATCGCTGTGGACCGTCGGTTCACCAATCAGCAAGGGGAACGGGAGACTGACTTCATCCCGATTGTCACAT
GGCGCCAGTTGGCGGAGAACTGCGCCAACTACCTGAAAAAAGGCCGCCTGGTCGGGGTGGACGGTCGTTTGCAAGTCCGC
AGTTACGAGAATAATGAAGGACGCAGGGTTTGGGTGACGGAAGTGGTAGCTGACGATGTCCGTTTCCTCGAACCGGCAGG
AGGTGCGTCCCGGAATCCCGGCATGGAGGGGGATTCCCAGCGCTTCTCGCCGAAGAGCAACAACGATTTCGACGACCCGT
TTGCGGATGATGGAAAGCCGATCGATATCTCTGACGACGATCTGCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.687
  ssb Latilactobacillus sakei subsp. sakei 23K

53.216

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.048

70

0.413
  ssb Neisseria meningitidis MC58

34.682

100

0.4
  ssb Neisseria gonorrhoeae MS11

34.682

100

0.4
  ssb Vibrio cholerae strain A1552

31.792

100

0.367

Multiple sequence alignment