Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   WDV80_RS06580 Genome accession   NZ_CP147733
Coordinates   1307688..1308362 (-) Length   224 a.a.
NCBI ID   WP_237648211.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302688..1313362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS06555 (WDV80_06555) - 1304418..1304798 (-) 381 WP_000787702.1 membrane protein -
  WDV80_RS06560 (WDV80_06560) - 1304805..1305242 (-) 438 WP_000754818.1 low molecular weight protein-tyrosine-phosphatase -
  WDV80_RS06565 (WDV80_06565) ruvB 1305394..1306392 (-) 999 WP_000196633.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WDV80_RS06570 (WDV80_06570) comR 1306593..1306847 (-) 255 WP_237648209.1 hypothetical protein Regulator
  WDV80_RS06575 (WDV80_06575) - 1306886..1307691 (+) 806 WP_088181596.1 IS5-like element IS1381A family transposase -
  WDV80_RS06580 (WDV80_06580) comR 1307688..1308362 (-) 675 WP_237648211.1 XRE family transcriptional regulator Regulator
  WDV80_RS06585 (WDV80_06585) purB 1308515..1309813 (-) 1299 WP_000572890.1 adenylosuccinate lyase -
  WDV80_RS06590 (WDV80_06590) - 1309835..1311226 (-) 1392 WP_001079797.1 hypothetical protein -
  WDV80_RS06595 (WDV80_06595) purK 1311279..1312370 (-) 1092 WP_001084008.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  WDV80_RS06600 (WDV80_06600) purE 1312357..1312845 (-) 489 WP_001182531.1 5-(carboxyamino)imidazole ribonucleotide mutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26212.16 Da        Isoelectric Point: 6.5016

>NTDB_id=863005 WDV80_RS06580 WP_237648211.1 1307688..1308362(-) (comR) [Streptococcus agalactiae strain SagR272_TC]
MLKHFGSKVRKFRESQQVTREEFCGDESELSVRQLARIEAGESVPNLSKAHYIARNLGVSLDSLTAGASLELSKKYKELK
YLILRTPTYNDTDRLDLIEKYLDEIYLNFYDDLPEDEKIAIESIQSSLDIYISKSHHFGDDLIREYMNQIKRKKIYSIND
LLIIKLWQYKITASRYDPNIFKIDTFIGTIDKLLNQVKVLSIENLFLLRDVLIYSLGILDFLRN

Nucleotide


Download         Length: 675 bp        

>NTDB_id=863005 WDV80_RS06580 WP_237648211.1 1307688..1308362(-) (comR) [Streptococcus agalactiae strain SagR272_TC]
ATGTTAAAACATTTTGGTAGTAAAGTAAGGAAGTTTAGGGAATCTCAACAGGTGACACGAGAAGAATTTTGTGGCGATGA
ATCAGAGTTATCGGTCCGACAGCTGGCTCGGATTGAAGCAGGAGAATCTGTTCCAAATTTATCTAAGGCGCATTATATCG
CTAGAAATCTAGGAGTTAGTTTAGATTCCTTAACAGCAGGAGCGAGTTTAGAACTGTCAAAAAAATATAAGGAATTAAAG
TATCTTATATTAAGGACGCCTACCTACAATGATACAGATAGACTTGATTTGATTGAAAAATATCTAGATGAGATTTATTT
AAATTTCTATGATGATTTACCTGAAGATGAAAAAATAGCAATTGAGTCCATACAAAGTTCTTTAGATATTTATATTTCTA
AAAGCCATCATTTTGGAGATGACCTGATTAGGGAATACATGAATCAAATTAAACGAAAAAAGATTTACTCTATCAATGAC
TTACTTATAATTAAACTATGGCAATATAAGATTACTGCTAGCAGGTATGATCCCAATATTTTTAAAATAGATACATTTAT
TGGTACTATAGATAAGTTGCTTAATCAAGTAAAGGTATTATCAATTGAAAACCTGTTTTTATTAAGGGATGTCCTCATTT
ATTCGTTAGGTATATTAGACTTCCTGCGAAACTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

48.402

97.768

0.473
  comR Streptococcus pyogenes MGAS315

48.357

95.089

0.46
  comR Streptococcus pyogenes MGAS8232

47.005

96.875

0.455
  comR Streptococcus suis 05ZYH33

44.7

96.875

0.433
  comR Streptococcus suis P1/7

44.7

96.875

0.433
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

49.733

83.482

0.415
  comR Streptococcus suis D9

38.71

96.875

0.375